From 4d7b597f698e31b2f4aebdec5d4fe0690c2dc0fc Mon Sep 17 00:00:00 2001
From: amiraa <amiraa@mit.edu>
Date: Sat, 30 Apr 2022 16:48:31 -0400
Subject: [PATCH] AM216_Final_Project
---
.gitignore | 55 +-
demos/indexDropbox.html | 89 +
demos/indexExampleGraph.html | 480 +
json/tutorial.json | 59357 +---------------------------
json/tutorialInit.json | 2 +-
julia/include/export.jl | 15 +
julia/include/forces.jl | 8 +-
julia/include/run.jl | 1647 +-
julia/include/updateNodes.jl | 14 +-
jupyter/AM216_Final_Project.ipynb | 1348 +
10 files changed, 3481 insertions(+), 59534 deletions(-)
create mode 100644 demos/indexDropbox.html
create mode 100644 demos/indexExampleGraph.html
create mode 100644 jupyter/AM216_Final_Project.ipynb
diff --git a/.gitignore b/.gitignore
index 9e0b20d..bf38b87 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,27 +1,28 @@
-node_modules
-.ipynb_checkpoints
-*.3dm.rhl
-*.3dmbak
-*.objbak
-*.stl
-*.obj
-*.mtl
-CAD
-tutorial
-newTendon
-live
-.DS_Store
-*.gif
-*.png
-*.mp4
-img
-res3d
-*.stlbak
-*.dxfbak
-*.3mf
-*bracket.3dm
-*new_face_75.3dm
-*.gcode
-objs
-library_vol_0.25_ratio_0.0
-obj
+node_modules
+.ipynb_checkpoints
+*.3dm.rhl
+*.3dmbak
+*.objbak
+*.stl
+*.obj
+*.mtl
+CAD
+tutorial
+newTendon
+live
+.DS_Store
+*.gif
+*.png
+*.mp4
+img
+res3d
+*.stlbak
+*.dxfbak
+*.3mf
+*bracket.3dm
+*new_face_75.3dm
+*.gcode
+objs
+library_vol_0.25_ratio_0.0
+obj
+AM216_Final_Project
diff --git a/demos/indexDropbox.html b/demos/indexDropbox.html
new file mode 100644
index 0000000..93471e0
--- /dev/null
+++ b/demos/indexDropbox.html
@@ -0,0 +1,89 @@
+<!doctype html>
+<html>
+<head>
+ <title>Dropbox JavaScript SDK</title>
+ <link rel="stylesheet" href="/styles.css">
+ <script src="https://cdn.jsdelivr.net/npm/promise-polyfill@7/dist/polyfill.min.js"></script>
+ <script src="https://cdnjs.cloudflare.com/ajax/libs/fetch/2.0.3/fetch.js"></script>
+ <script src="https://unpkg.com/dropbox@10.28.0/dist/Dropbox-sdk.min.js"></script>
+</head>
+<body>
+ <!-- Example layout boilerplate -->
+ <header class="page-header">
+ <div class="container">
+ <nav>
+ <a href="/">
+ <h1>
+ <img src="https://cfl.dropboxstatic.com/static/images/brand/logotype_white-vflRG5Zd8.svg" class="logo" />
+ JavaScript SDK Examples
+ </h1>
+ </a>
+ <a href="https://github.com/dropbox/dropbox-sdk-js/tree/main/examples/javascript" class="view-source">View Source</a>
+ </nav>
+ <h2 class="code">
+ <a href="/">examples</a> / basic
+ </h2>
+ </div>
+ </header>
+
+ <!-- Example description and UI -->
+ <section class="container main">
+ <p>This example fetches the contents of your root Dropbox directory. It uses the <code>Dropbox.filesListFolder()</code> method [<a href="http://dropbox.github.io/dropbox-sdk-js/Dropbox.html#filesListFolder">docs</a>].</p>
+
+ <!-- <form id="basic-form" onSubmit="return listFiles()">
+ <input type="text" id="access-token" placeholder="Access token" />
+ <button type="submit">Submit</button>
+ </form> -->
+
+ <!-- The files returned from the SDK will be added here -->
+ <ul id="files"></ul>
+
+ <p class="info">To obtain an access token for quick testing, you can go to <a href="https://dropbox.github.io/dropbox-api-v2-explorer/#files_list_folder" target="_blank">API Explorer</a> click the "Get Token" button on the top right, copy the token it creates and then paste it here.</p>
+ </section>
+
+ <!-- Scripts to run example -->
+ <script>
+ var form = document.getElementById('basic-form');
+ var ACCESS_TOKEN = "sl.BGviryDjQhu6utc8dYNFgdL9qyZuhKDji159P5C1rXja2MPu1tuDseCRWM_-FFDbC_ZNWi90ALgmOwBQ-e0a2QbwIIiYJK1-hSuOTW19Sis6DgKIjbraEbsxfRQYYFd14mlinn8X";
+
+ var dbx = new Dropbox.Dropbox({ accessToken: ACCESS_TOKEN });
+ dbx.filesListFolder({path: 'id:3rLnCv96uAAAAAAAAAy7Pg'})
+ .then(function(response) {
+ console.log('response', response)
+ displayFiles(response.result.entries);
+ })
+ .catch(function(error) {
+ console.error(error);
+ });
+
+ // form.onsubmit = function listFiles(e) {
+ // e.preventDefault();
+
+ // var ACCESS_TOKEN = "sl.BGviryDjQhu6utc8dYNFgdL9qyZuhKDji159P5C1rXja2MPu1tuDseCRWM_-FFDbC_ZNWi90ALgmOwBQ-e0a2QbwIIiYJK1-hSuOTW19Sis6DgKIjbraEbsxfRQYYFd14mlinn8X";
+
+
+ // document.getElementById('access-token').value;
+ // var dbx = new Dropbox.Dropbox({ accessToken: ACCESS_TOKEN });
+ // dbx.filesListFolder({path: ''})
+ // .then(function(response) {
+ // console.log('response', response)
+ // displayFiles(response.result.entries);
+ // })
+ // .catch(function(error) {
+ // console.error(error);
+ // });
+ // }
+
+ function displayFiles(files) {
+ var filesList = document.getElementById('files');
+ var li;
+ for (var i = 0; i < files.length; i++) {
+ li = document.createElement('li');
+ console.log(files[i])
+ li.appendChild(document.createTextNode(files[i].name));
+ filesList.appendChild(li);
+ }
+ }
+ </script>
+</body>
+</html>
diff --git a/demos/indexExampleGraph.html b/demos/indexExampleGraph.html
new file mode 100644
index 0000000..11a00ff
--- /dev/null
+++ b/demos/indexExampleGraph.html
@@ -0,0 +1,480 @@
+<head>
+ <style> body { margin: 0; } </style>
+ <title>MetaVoxel</title>
+
+ <script src="https://unpkg.com/dropbox@10.28.0/dist/Dropbox-sdk.min.js"></script>
+
+ <script src="../lib/dat.gui.js"></script>
+
+ <script src="//unpkg.com/three"></script>
+
+ <script src="../lib/js-colormaps.js"></script>
+
+ <script src="https://ajax.googleapis.com/ajax/libs/jquery/3.4.1/jquery.min.js"></script>
+ <script src="//unpkg.com/3d-force-graph"></script>
+ <!-- <script src="../lib/3d-force-graph.js"></script> -->
+ <script src="//unpkg.com/three-spritetext"></script>
+
+ <script src="../visualization/utils.js"></script>
+ </head>
+
+ <body>
+ <div id="3d-graph"></div>
+
+ <script>
+ var color1= 0xffffff; /*white*/
+ var color2= '#020227'; /*kohly*/
+ var color3= 0x1c5c61; /*teal*/
+ var color4= "#fa6e70"; //red/orange
+ var color5="#380152"; //purple
+ var color6="#696767"; //grey
+ var color7="#03dbfc"; //blue
+
+ var name="tutorial";
+ // var name="newTendon";
+
+ var scale,nodeScale;
+
+ var interaction= {
+ type:"train",
+ number:"1",
+ exaggeration:1,
+ speed:100/10, //100
+ run: getFiles
+ }
+
+ var gui = new dat.GUI();
+ // gui.add(interaction,'exaggeration',0.0,100.0).listen();
+ // gui.add(interaction,'speed',0.0,2000.0).listen();
+ gui.add(interaction,'type',{ train: 'train', gen1: 'gen1', gen2: 'gen2' }).listen();
+ gui.add(interaction,'number').listen();
+ gui.add(interaction,'run').listen();
+
+ var ACCESS_TOKEN = "sl.BGviryDjQhu6utc8dYNFgdL9qyZuhKDji159P5C1rXja2MPu1tuDseCRWM_-FFDbC_ZNWi90ALgmOwBQ-e0a2QbwIIiYJK1-hSuOTW19Sis6DgKIjbraEbsxfRQYYFd14mlinn8X";
+
+ var dbx = new Dropbox.Dropbox({ accessToken: ACCESS_TOKEN });
+ // console.log(dbx.filesListFolder({path: 'id:3rLnCv96uAAAAAAAAAy7Pg'}).result)
+ // var files=getFiles("train","1");
+ // displayFiles(files);
+
+ var urls=[]
+ var count=0;
+ var ii=[];
+ var names=[];
+
+ function getFiles(){
+ urls=[]
+ count=0;
+ ii=[];
+ names=[];
+
+
+ var name=interaction.type;
+ var number=interaction.number;
+ var folder1="";
+ var folder2="";
+ var files="";
+ dbx.filesListFolder({path: 'id:3rLnCv96uAAAAAAAAAy7Pg'})
+ .then(function(response) {
+ // console.log('response', response)
+
+ folder1=displayFiles(response.result.entries,name);
+ console.log(folder1)
+ dbx.filesListFolder({path: folder1.id})
+ .then(function(response) {
+ // console.log('response', response)
+
+ folder2=displayFiles(response.result.entries,number);
+ console.log(folder2)
+ dbx.filesListFolder({path: folder2.id})
+ .then(function(response) {
+ // console.log('response', response)
+
+ files=response.result.entries;
+
+
+ for (var i = 0; i < files.length; i++) {
+ // filesGetTemporaryLink
+ // filesDownload
+ var file=files[i];
+
+ // console.log(ii)
+ dbx.filesGetTemporaryLink({path: file.id})
+ .then(function(response) {
+ // console.log('response', response.result)
+
+ var nname=response.result.metadata.name;
+ // console.log(nname)
+ ii.push(parseInt(nname.slice(0, -5)))
+ names.push(nname);
+
+ urls.push(response.result.link)
+ // console.log(ii)
+ count++;
+ if (count==files.length){
+ // console.log(ii)
+ // console.log(urls);
+ show();
+ }
+
+ })
+ .catch(function(error) {
+ console.error(error);
+ });
+ }
+ })
+ .catch(function(error) {
+ console.error(error);
+ });
+ })
+ .catch(function(error) {
+ console.error(error);
+ });
+ })
+ .catch(function(error) {
+ console.error(error);
+ });
+
+
+ }
+
+
+
+
+
+ function displayFiles(files,name) {
+ for (var i = 0; i < files.length; i++) {
+ if (files[i].name==name){
+ // console.log(files[i])
+ return files[i];
+ }
+ }
+ }
+
+
+ function show(){
+ // var name=interaction.name;
+ $.getJSON(urls[ii.indexOf(0)], function(json0) {
+ var maxNumFiles=json0.maxNumFiles-1;
+ var vizScale=json0.scale;
+ // var vizScale=1;
+ $.getJSON(urls[ii.indexOf(urls.length-1)], function(json) {
+ var setup=json;
+ var static=false
+ setup.viz.colorMaps=[YlGnBu,coolwarm, winter ,jet];
+
+
+
+ if(setup.hierarchical){
+ // scale=setup.scale*200;
+ // nodeScale=scale/1500;
+ scale=setup.scale*0.001;
+ nodeScale=scale*10;
+
+ }else{
+ scale=setup.scale*50;
+ nodeScale=scale*2.0;
+ }
+ if (setup.multiscale){
+
+ scale=setup.scale*0.003;
+ nodeScale=scale*10
+
+ }
+
+
+ var stress=0.0;
+ var gData =
+ {
+ nodes: setup.nodes.map(node => ({
+ // id: node.id,
+ id: (node.parent=="11")?node.id:(node.parent+node.id),
+ px:node.position.x*scale*vizScale,
+ py:node.position.y*scale*vizScale,
+ pz:node.position.z*scale*vizScale,
+ dx:node.displacement.x*scale*vizScale,
+ dy:node.displacement.y*scale*vizScale,
+ dz:node.displacement.z*scale*vizScale,
+ restrained:node.restrained_degrees_of_freedom[0],
+ loaded:!(node.force.x==0.0&&node.force.y==0.0&&node.force.z==0.0),
+ displaced:(node.fixedDisplacement===undefined ||(node.fixedDisplacement.x==0&&node.fixedDisplacement.y==0&&node.fixedDisplacement.z==0))?false:true,
+ dxs:new Array(maxNumFiles).fill(0),
+ dys:new Array(maxNumFiles).fill(0),
+ dzs:new Array(maxNumFiles).fill(0),
+ axs:new Array(maxNumFiles).fill(0),
+ ays:new Array(maxNumFiles).fill(0),
+ azs:new Array(maxNumFiles).fill(0),
+ size:(node.material===undefined) ? nodeScale:(( setup.multiscale===undefined || !setup.multiscale)?(nodeScale*0.8):(node.scale*nodeScale*0.8**(1/node.scale))),
+ opacity: (node.parent=="11"|| setup.multiscale===undefined ||node.parent=="")?0.8:0.0,
+
+ })),
+ links: setup.edges
+ .filter(edge => edge.id)
+ .map(edge => ({
+ // source: 'n'+edge.source,
+ // target: 'n'+edge.target,
+ source: (setup.multiscale===undefined || !setup.multiscale ||edge.sourceNodalCoordinate==0)?'n'+edge.source:('n'+edge.source+'n'+edge.sourceNodalCoordinate),
+ target: (setup.multiscale===undefined || !setup.multiscale ||edge.targetNodalCoordinate==0)?'n'+edge.target:('n'+edge.target+'n'+edge.targetNodalCoordinate),
+
+ stresses:new Array(maxNumFiles).fill(getColor(setup.viz,edge.stress)),
+ stressesVal:new Array(maxNumFiles).fill(edge.stress),
+ color:getColor(setup.viz,edge.stress)
+ }))
+ };
+
+ // console.log(getColor(setup.viz,setup.edges[0].stress))
+
+
+
+ //////////////////////////////////////////////////////////////////////////
+ const Graph = ForceGraph3D({ controlType: 'orbit' }).backgroundColor(color2)
+ (document.getElementById('3d-graph'))
+ .d3Force('center', null)
+ .d3Force('charge', null)
+ .linkWidth(1.0*scale)
+ .linkOpacity(1.0)
+ // .linkColor(color3)
+ .nodeThreeObject(({ size,restrained,loaded,displaced,opacity }) => new THREE.Mesh(
+ new THREE.BoxGeometry(size, size, size)
+ ,
+ new THREE.MeshLambertMaterial({
+ color: getNodeColor(restrained,loaded,displaced),
+ transparent: opacity>0.0?false:true,
+ transparent:false,
+ opacity: opacity
+ })
+ ))
+ .d3Force('box', () => {
+
+ gData.nodes.forEach(node => {
+ node.fx=node.px;
+ node.fy=node.py;
+ node.fz=node.pz;
+
+ });
+ })
+ .cooldownTime(Infinity)
+ .graphData(gData);
+
+ var position=new THREE.Vector3(500,100,3000);
+ Graph.camera().position.copy( position );
+ // Graph.camera().lookAt( 500, orbit.target.y, orbit.target.z );
+ // Graph.camera().lookAt( 500, 0, 0 );
+ Graph.controls().target.set( 500, 100, 0 );
+
+ ////////////////////////////////////
+ drawConstraintBoundingBoxes(json0,Graph.scene(),scale*vizScale);
+
+
+ ///////////////////////////////////////
+
+ if(static){
+ var count=0;
+ var totalCount=0;
+ var increment=true;
+
+ setInterval(() => {
+ Graph.d3Force('box', () => {
+ gData.nodes.forEach(node => {
+ node.fx=node.px+count/interaction.speed*node.dx*interaction.exaggeration;
+ node.fy=node.py+count/interaction.speed*node.dy*interaction.exaggeration;
+ node.fz=node.pz+count/interaction.speed*node.dz*interaction.exaggeration;
+
+ });
+ });
+
+ if(count>interaction.speed){
+ increment=false;
+ }else if (count<0){
+ increment=true;
+ }
+
+ if(increment){
+ count++;
+ }else{
+ count--;
+ }
+
+ }, 1);
+
+ }else{ //dynamic
+ for(let i=0;i<maxNumFiles;i++){
+ $.getJSON(urls[ii.indexOf(i)] , function(jsons) {
+ var setups=jsons;
+ for(let j=0;j<setups.nodes.length;j++){
+ gData.nodes[j].dxs[i]=setups.nodes[j].displacement.x*scale*vizScale;
+ gData.nodes[j].dys[i]=setups.nodes[j].displacement.y*scale*vizScale;
+ gData.nodes[j].dzs[i]=setups.nodes[j].displacement.z*scale*vizScale;
+ gData.nodes[j].axs[i]=setups.nodes[j].angle.x;
+ gData.nodes[j].ays[i]=setups.nodes[j].angle.y;
+ gData.nodes[j].azs[i]=setups.nodes[j].angle.z;
+ }
+ for(let j=0;j<setups.edges.length;j++){
+ setups.viz.colorMaps=[YlGnBu,coolwarm, winter ,jet];
+ setups.viz.colorMap=0;
+ // console.log(getColor(setups.viz,setups.edges[j].stress))
+ gData.links[j].stresses[i]=getColor(setups.viz,setups.edges[j].stress);
+ gData.links[j].stressesVal[i]=setups.edges[j].stress;
+ }
+ });
+ }
+
+ var count=0;
+ var totalCount=0;
+ var increment=true;
+
+
+
+ setInterval(() => {
+ Graph.d3Force('box', () => {
+ gData.nodes.forEach(node => {
+ node.fx=node.px+node.dxs[count]*interaction.exaggeration;
+ node.fy=node.py+node.dys[count]*interaction.exaggeration;
+ node.fz=node.pz+node.dzs[count]*interaction.exaggeration;
+ });
+
+ });
+
+ // gData.links.forEach(edge => {edge.color=edge.stresses[count]});
+ // Graph.graphData(gData);
+
+ Graph.nodeThreeObject(({ size,restrained,loaded,displaced,axs,ays,azs,opacity }) => getMesh(size,restrained,loaded,displaced,axs[count],ays[count],azs[count],opacity) );
+
+ Graph.linkColor(({ stresses }) => stresses[count]);
+ // Graph.linkWidth(({ stressesVal }) => (stressesVal[count]==0.0)?(scale/10.0):scale)
+ // Graph.linkOpacity(({ stresses }) => stresses[count]);
+ // console.log()
+
+
+ count++;
+ if(count>maxNumFiles-1){
+ count=0;
+ }
+ // if(count>=maxNumFiles-1){
+ // increment=false;
+ // }else if (count<=1){
+ // increment=true;
+ // }
+
+ // if(increment){
+ // count++;
+ // }else{
+ // count--;
+ // }
+
+ }, interaction.speed);
+
+ }
+
+
+
+
+ });
+
+ });
+
+
+ }
+
+
+
+
+ function drawConstraintBoundingBoxes(setup,scene,scale){
+
+ //grid helper
+ var helper = new THREE.GridHelper( 100, 100 );
+ helper.position.y = -setup.voxelSize/2.0*scale;
+
+ helper.position.y = -setup.voxelSize/2.0*scale +2*setup.voxelSize*scale;
+ if (setup.hierarchical){
+ helper.position.y=setup.voxelSize*scale*(1.2 -0.1)
+ }
+
+ helper.position.y=10000*setup.voxelSize*scale
+ helper.position.y=0.0
+ console.log(helper.position.y)
+
+ helper.material.opacity = 0.4;
+ helper.material.transparent = true;
+ helper.scale.x=2.0*scale
+ helper.scale.z=2.0*scale
+ scene.add(helper);
+
+ let supports=setup.supports;
+ let loads=setup.loads;
+ let mat=setup.materials;
+ let disps=setup.fixedDisplacements;
+ if (supports ) {
+ for (var i=0;i< supports.length;i++) {
+ let s=supports[i][0];
+ drawBox(s.min,s.max,color4,scene,scale);
+ }
+ }
+ if (loads ) {
+ for (var i=0;i< loads.length;i++) {
+ let l=loads[i][0];
+ drawBox(l.min,l.max,color7,scene,scale);
+ }
+
+ }
+ if (disps ) {
+ for (var i=0;i< disps.length;i++) {
+ let l=disps[i][0];
+ drawBox(l.min,l.max,color7,scene,scale);
+ }
+
+ }
+ if (mat ) {
+
+ for (var i=0;i< mat.length;i++) {
+ let l=mat[i][0];
+ // console.log(l)
+ drawBox(l.min,l.max,color5,scene,scale);
+ }
+
+ }
+
+ };
+
+ function drawBox (min,max,color,scene,scale) {
+ var box = new THREE.Box3(new THREE.Vector3(min.x*scale,min.y*scale,min.z*scale),new THREE.Vector3(max.x*scale,max.y*scale,max.z*scale));
+ var helper = new THREE.Box3Helper( box, color );
+ scene.add( helper );
+ // todo add name??
+ };
+
+ function getNodeColor(restrained,loaded,displaced){
+ if (restrained){
+ return 0xfa6e70;
+ }else if(loaded){
+ return 0x03dbfc;
+ }else if(displaced){
+ return 0x03dbfc;
+ }else{
+ return color3;
+ }
+ }
+
+ function getMesh(size,restrained,loaded,displaced,ax,ay,az,opacity){
+ var m=new THREE.Mesh(
+ new THREE.BoxGeometry(size, size, size),
+ new THREE.MeshLambertMaterial({
+ color: getNodeColor(restrained,loaded,displaced),
+ transparent: opacity>0.0?false:true,
+ transparent: false,
+ opacity: opacity
+ })
+ );
+ m.rotation.x=ax;
+ m.rotation.y=ay;
+ m.rotation.z=az;
+ m.visible = !(opacity>0.0?false:true);
+
+ return m;
+
+ }
+
+
+
+ </script>
+ </body>
\ No newline at end of file
diff --git a/json/tutorial.json b/json/tutorial.json
index 53d7faf..fad81cf 100644
--- a/json/tutorial.json
+++ b/json/tutorial.json
@@ -21,9 +21,9 @@
true
],
"position": {
- "x": 75,
- "y": 0,
- "z": 37.5
+ "x": 0.0005,
+ "y": 0.0005,
+ "z": 0.0005
},
"force": {
"x": 0,
@@ -47,10 +47,10 @@
},
"material": {
"cTE": 0,
- "poissonRatio": 0.35,
- "density": 0.028,
- "area": 5.6644,
- "stiffness": 2000
+ "poissonRatio": 0,
+ "density": 1000,
+ "area": 0.000001,
+ "stiffness": 1000000
},
"nomSize": 1
},
@@ -74,9 +74,9 @@
true
],
"position": {
- "x": 37.5,
- "y": 0,
- "z": 0
+ "x": 0.0005,
+ "y": 0.0005,
+ "z": 0.0015
},
"force": {
"x": 0,
@@ -100,10 +100,10 @@
},
"material": {
"cTE": 0,
- "poissonRatio": 0.35,
- "density": 0.028,
- "area": 5.6644,
- "stiffness": 2000
+ "poissonRatio": 0,
+ "density": 1000,
+ "area": 0.000001,
+ "stiffness": 1000000
},
"nomSize": 1
},
@@ -127,9 +127,9 @@
true
],
"position": {
- "x": 0,
- "y": 0,
- "z": 37.5
+ "x": 0.0005,
+ "y": 0.0015,
+ "z": 0.0005
},
"force": {
"x": 0,
@@ -152,11 +152,11 @@
"z": 0
},
"material": {
- "cTE": 0,
- "poissonRatio": 0.35,
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},
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@@ -180,9 +180,9 @@
true
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@@ -205,11 +205,11 @@
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},
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@@ -233,9 +233,9 @@
true
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@@ -259,10 +259,10 @@
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@@ -286,9 +286,9 @@
true
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@@ -312,10 +312,10 @@
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@@ -339,9 +339,9 @@
true
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@@ -364,11 +364,11 @@
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@@ -392,9 +392,9 @@
true
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@@ -417,11 +417,11 @@
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@@ -445,9 +445,9 @@
true
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@@ -471,10 +471,10 @@
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@@ -498,9 +498,9 @@
true
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@@ -524,10 +524,10 @@
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@@ -551,9 +551,9 @@
true
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@@ -576,11 +576,11 @@
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@@ -604,9 +604,9 @@
true
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@@ -629,11 +629,11 @@
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@@ -649,17 +649,17 @@
77
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@@ -683,10 +683,10 @@
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@@ -702,17 +702,17 @@
83
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@@ -736,10 +736,10 @@
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@@ -755,17 +755,17 @@
89
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@@ -788,11 +788,11 @@
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@@ -816,9 +816,9 @@
true
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@@ -841,11 +841,11 @@
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@@ -869,9 +869,9 @@
true
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@@ -895,10 +895,10 @@
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@@ -922,9 +922,9 @@
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@@ -948,10 +948,10 @@
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@@ -1000,11 +1000,11 @@
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@@ -1073,17 +1073,17 @@
125
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@@ -1107,10 +1107,10 @@
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@@ -1126,17 +1126,17 @@
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@@ -1160,10 +1160,10 @@
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@@ -1179,17 +1179,17 @@
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@@ -1212,11 +1212,11 @@
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@@ -1240,9 +1240,9 @@
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@@ -1293,9 +1293,9 @@
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@@ -1319,10 +1319,10 @@
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@@ -1346,9 +1346,9 @@
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@@ -1372,10 +1372,10 @@
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@@ -1399,9 +1399,9 @@
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@@ -1424,11 +1424,11 @@
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@@ -1452,9 +1452,9 @@
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@@ -1477,58816 +1477,798 @@
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+ "x": 0.006,
"z": 0,
- "y": 581.25
+ "y": 0
}
},
{
"x": 0,
"z": 0,
- "y": -0.5
+ "y": 0
}
]
],
"fixedDisplacements": [],
- "numTimeSteps": 50000,
- "maxNumFiles": 300,
+ "numTimeSteps": 200,
+ "maxNumFiles": 200,
"poisson": false,
- "scale": 1,
+ "scale": 10000,
"linear": true,
- "globalDamping": 0.001,
- "thermal": false
+ "globalDamping": 0.15,
+ "thermal": true
}
}
\ No newline at end of file
diff --git a/json/tutorialInit.json b/json/tutorialInit.json
index 23ac381..7688be6 100644
--- a/json/tutorialInit.json
+++ b/json/tutorialInit.json
@@ -1 +1 @@
-{"setup":{"materials":[[{"max":{"x":1125,"z":1125,"y":1125},"min":{"x":-1125,"z":-1125,"y":-1125}},{"cTE":0.0,"poissonRatio":0.35,"density":0.028,"area":5.6644,"stiffness":2000.0}]],"poisson":false,"rhino":false,"latticeSizeY":8,"scale":1.0,"supports":[[{"max":{"x":150,"z":600,"y":18.75},"min":{"x":0.0,"z":0.0,"y":0.0}},[true,true,true,true,true,true]]],"thermal":false,"loads":[[{"max":{"x":150,"z":600,"y":600},"min":{"x":0,"z":0,"y":581.25}},{"x":0.0,"z":0.0,"y":-0.5}]],"maxNumFiles":300,"voxelSize":75,"numTimeSteps":50000,"fixedDisplacements":[],"linear":true,"latticeSizeX":2,"gridSize":15,"latticeSizeZ":8,"useVoxelList":false,"hierarchical":false,"globalDamping":0.001}}
\ No newline at end of file
+{"setup":{"materials":[[{"max":{"x":0.01,"z":0.01,"y":0.01},"min":{"x":-0.01,"z":-0.01,"y":-0.01}},{"cTE":0.0,"poissonRatio":0.0,"density":1000.0,"area":1.0e-6,"stiffness":1.0e6}],[{"max":{"x":0.007,"z":0.002,"y":0.002},"min":{"x":0,"z":0,"y":0.001}},{"cTE":0.2,"poissonRatio":0.0,"density":1000.0,"area":1.0e-6,"stiffness":1.0e6}]],"poisson":false,"rhino":false,"latticeSizeY":2,"scale":10000.0,"supports":[[{"max":{"x":0.001,"z":0.002,"y":0.002},"min":{"x":0,"z":0,"y":0}},[true,true,true,true,true,true]]],"thermal":true,"loads":[[{"max":{"x":0.007,"z":0.002,"y":0.002},"min":{"x":0.006,"z":0,"y":0}},{"x":0.0,"z":0.0,"y":0.0}]],"maxNumFiles":200,"voxelSize":0.001,"numTimeSteps":200,"fixedDisplacements":[],"linear":true,"latticeSizeX":7,"gridSize":10,"latticeSizeZ":2,"useVoxelList":false,"hierarchical":true,"globalDamping":0.15}}
\ No newline at end of file
diff --git a/julia/include/export.jl b/julia/include/export.jl
index de346e0..41b54e1 100644
--- a/julia/include/export.jl
+++ b/julia/include/export.jl
@@ -13,12 +13,16 @@ function updateDataAndSave!(metavoxel,setup,fileName,sys="GPU")
N_position=Array(metavoxel["N_positionGPU"])
N_angle=Array(metavoxel["N_angleGPU"])
E_stress=Array(metavoxel["E_stressGPU"])
+ N_vel=Array(metavoxel["N_velGPU"])
+ N_velAngl=Array(metavoxel["N_velAnglGPU"])
else
# CPU
N_displacement=Array(metavoxel["N_displacement"])
N_position=Array(metavoxel["N_position"])
N_angle=Array(metavoxel["N_angle"])
E_stress=Array(metavoxel["E_stress"])
+ N_vel=Array(metavoxel["N_vel"])
+ N_velAngl=Array(metavoxel["N_velAngl"])
end
setup["viz"]["maxStress"]=maximum(E_stress)
@@ -56,6 +60,7 @@ function updateDataAndSave!(metavoxel,setup,fileName,sys="GPU")
support[1]["max"]["z"]=support[1]["max"]["z"]*scale1
end
end
+
if haskey(setup,"loads")
loads = setup["loads"]
for load in loads
@@ -96,6 +101,16 @@ function updateDataAndSave!(metavoxel,setup,fileName,sys="GPU")
for node in nodes
node["posTimeSteps"]=[]
node["angTimeSteps"]=[]
+
+ node["vel"]=Dict()
+ node["vel"]["x"]= (N_vel[i].x)
+ node["vel"]["y"]= (N_vel[i].y)
+ node["vel"]["z"]= (N_vel[i].z)
+
+ node["velAngl"]=Dict()
+ node["velAngl"]["x"]= (N_velAngl[i].x)
+ node["velAngl"]["y"]= (N_velAngl[i].y)
+ node["velAngl"]["z"]= (N_velAngl[i].z)
# node["degrees_of_freedom"]=""
if !haskey(setup,"multiscale") || node["parent"]==""
diff --git a/julia/include/forces.jl b/julia/include/forces.jl
index ec67842..b86a6a6 100644
--- a/julia/include/forces.jl
+++ b/julia/include/forces.jl
@@ -4,7 +4,7 @@
# BASED ON https://github.com/jonhiller/Voxelyze
-function force(i,N_intForce,N_orient,N_force,N_position,N_currentPosition,currentTimeStep,material,linMom)
+function force(i,N_intForce,N_orient,N_force,N_position,N_currentPosition,currentTimeStep,material,linMom,N_vel)
# forces from internal bonds
totalForce=Vector3(0,0,0)
# new THREE.Vector3(node.force.x,node.force.y,node.force.z);
@@ -44,7 +44,7 @@ function force(i,N_intForce,N_orient,N_force,N_position,N_currentPosition,curren
vel=linMom*Vector3((massInverse*globalDampingTranslateC),(massInverse*globalDampingTranslateC),(massInverse*globalDampingTranslateC))
-
+ N_vel[i]=vel
# x=vel.x*1e0/globalDampingTranslateC
# y=vel.y*1e0/globalDampingTranslateC
@@ -77,7 +77,7 @@ function force(i,N_intForce,N_orient,N_force,N_position,N_currentPosition,curren
return totalForce
end
-function moment(intMoment,orient,moment,material,angMom)
+function moment(i,intMoment,orient,moment,material,angMom,N_velAngl)
#moments from internal bonds
totalMoment=Vector3(0,0,0)
# for (int i=0; i<6; i++){
@@ -100,7 +100,7 @@ function moment(intMoment,orient,moment,material,angMom)
globalDampingRotateC=material.zetaGlobal*_2xSqIxExSxSxS
angularVelocity=angMom*Vector3(material.momentInertiaInverse*globalDampingRotateC,material.momentInertiaInverse*globalDampingRotateC,material.momentInertiaInverse*globalDampingRotateC)
totalMoment= totalMoment-angularVelocity; #global damping
-
+ N_velAngl[i]=angularVelocity
# x=totalMoment.x
# y=totalMoment.y
diff --git a/julia/include/run.jl b/julia/include/run.jl
index 3245bc8..b513383 100644
--- a/julia/include/run.jl
+++ b/julia/include/run.jl
@@ -1,818 +1,829 @@
-# Amira Abdel-Rahman
-# (c) Massachusetts Institute of Technology 2020
-#################################################################
-function runMetaVoxels!(setup,folderPath,sys="GPU")
-
- maxNumTimeSteps=setup["numTimeSteps"]
- maxNumFiles=setup["maxNumFiles"]
-
- saveEvery=round(maxNumTimeSteps/maxNumFiles)
- maxNumFiles=round(maxNumTimeSteps/saveEvery)-1
- setup["maxNumFiles"]=maxNumFiles
-
- function initialize!(setup)
- nodes = setup["nodes"]
- edges = setup["edges"]
-
- i=1
- for node in nodes
- if node["parent"]=="11" || node["parent"]=="" #to ignore child nodes that are there for visualization
- # element=parse(Int,node["id"][2:end])
- node["position"]["y"]=node["position"]["y"]+0.0
- node["position"]["z"]=node["position"]["z"]+0.0
- N_position[i]=Vector3(node["position"]["x"],node["position"]["y"],node["position"]["z"])
- N_restrained[i]=DOF(node["restrained_degrees_of_freedom"][1],node["restrained_degrees_of_freedom"][2],node["restrained_degrees_of_freedom"][3],node["restrained_degrees_of_freedom"][4],node["restrained_degrees_of_freedom"][5],node["restrained_degrees_of_freedom"][6])
- N_displacement[i]=Vector3(node["displacement"]["x"],node["displacement"]["y"],node["displacement"]["z"])
- N_angle[i]=Vector3(node["angle"]["x"],node["angle"]["y"],node["angle"]["z"])
- N_force[i]=Vector3(node["force"]["x"],node["force"]["y"],node["force"]["z"])
- N_fixedDisplacement[i]=Vector3(node["fixedDisplacement"]["x"],node["fixedDisplacement"]["y"],node["fixedDisplacement"]["z"])
- N_currPosition[i]=Vector3(node["position"]["x"],node["position"]["y"],node["position"]["z"])
-
- E=2000
- E = node["material"]["stiffness"] # MPa
- nu=0.0
- if haskey(node["material"], "poissonRatio") #todo change material data to nodes
- nu= node["material"]["poissonRatio"]
- end
- # println(nu)
-
- rho=1e3
- rho = node["material"]["density"] # MPa
-
- momentInertiaInverse=1.92e-6
- inertia=1/momentInertiaInverse
-
-
- zetaInternal=1.0
- zetaGlobal=0.2
- if haskey(setup,"globalDamping")
- zetaGlobal=setup["globalDamping"]
- end
- zetaCollision=0.0
- muStatic= 2.0
- muKinetic= 0.1
- nomSize=round(sqrt(node["material"]["area"] );digits=10)
- # nomSize=nomSize*2.0 #why??
- mass=round(nomSize*nomSize*nomSize *rho;digits=10)
-
-
- linear=true
- poisson=false
- if haskey(setup,"linear")
- linear=setup["linear"]
- end
- if haskey(setup,"poisson")
- poisson= setup["poisson"]
- end
- cTE=0.0 #Coefficient of thermal expansion
- if haskey(setup,"thermal") # later change for node matrial data
- if setup["thermal"]
- cTE=node["material"]["cTE"]
- end
- end
- # print("poisson $poisson")
- # epsilonFail=E*1000.0
-
- scale =0
- if haskey(setup,"multiscale")
- if setup["multiscale"]
- scale=node["scale"]
- end
- nomSize=nomSize*scale
- mass=round(nomSize*nomSize*nomSize *rho;digits=10)
- end
- N_material[i]= voxelMaterial(E, mass, nu, rho, zetaInternal, zetaGlobal, zetaCollision, muStatic, muKinetic, nomSize, linear, poisson, cTE, scale)
- N_materialtmp[i] = voxelMaterial(E, mass, nu, rho, zetaInternal, zetaGlobal, zetaCollision, muStatic, muKinetic, nomSize, linear, poisson, cTE, scale)
-
-
- i=i+1
- else
- # node["position"]["x"]= node["position"]["x"]*setup["scale"] #for export
- # node["position"]["y"]= node["position"]["y"]*setup["scale"] #for export
- # node["position"]["z"]= node["position"]["z"]*setup["scale"] #for export
- node["position"]["x"]= node["position"]["x"] #for export
- node["position"]["y"]= node["position"]["y"] #for export
- node["position"]["z"]= node["position"]["z"] #for export
- end
- end
-
- i=1
- for edge in edges
- # element=parse(Int,edge["id"][2:end])
-
- # find the nodes that the elements connects
- fromNode = nodes[edge["source"]+1]
- toNode = nodes[edge["target"]+1]
-
- sourceRelPos=Vector3(0,0,0)
- targetRelPos=Vector3(0,0,0)
-
- if haskey(setup,"multiscale")
- E_sourceNodalCoordinate[i]=edge["sourceNodalCoordinate"]
- E_targetNodalCoordinate[i]=edge["targetNodalCoordinate"]
- sourceRelPos=getRelativePosition(E_sourceNodalCoordinate[i],setup["voxelSize"]/2.0)
- targetRelPos=getRelativePosition(E_targetNodalCoordinate[i],setup["voxelSize"]/2.0)
- end
-
-
-
- node1 = [fromNode["position"]["x"]+sourceRelPos.x fromNode["position"]["y"]+sourceRelPos.y fromNode["position"]["z"]+sourceRelPos.z]
- node2 = [toNode["position"]["x"]+targetRelPos.x toNode["position"]["y"]+targetRelPos.y toNode["position"]["z"]+targetRelPos.z]
-
- length=norm(node2-node1)
- axis=normalize(collect(Iterators.flatten(node2-node1))) # pre-calculate the axis
-
- E_source[i]=edge["source"]+1
- E_target[i]=edge["target"]+1
- E_axis[i]=Vector3(axis[1],axis[2],axis[3])
- E_currentRestLength[i]=length #?????? todo change
-
- N_edgeID[E_source[i],N_currEdge[E_source[i]]]=i
- N_edgeFirst[E_source[i],N_currEdge[E_source[i]]]=true
- N_currEdge[E_source[i]]+=1
-
- N_edgeID[E_target[i],N_currEdge[E_target[i]]]=i
- N_edgeFirst[E_target[i],N_currEdge[E_target[i]]]=false
- N_currEdge[E_target[i]]+=1
-
- E=edge["material"]["stiffness"]
- E=(N_material[E_source[i]].E+N_material[E_target[i]].E)/2.0
- mass=(N_material[E_source[i]].mass+N_material[E_target[i]].mass)/2.0 #not used anymore
- nu=(N_material[E_source[i]].nu+N_material[E_target[i]].nu)/2.0
- rho=edge["material"]["density"]
- rho=(N_material[E_source[i]].rho+N_material[E_target[i]].rho)/2.0
-
- E = (N_materialtmp[E_source[i]].E + N_materialtmp[E_target[i]].E) / 2.0
- nu = (N_materialtmp[E_source[i]].nu + N_materialtmp[E_target[i]].nu) / 2.0
- rho = edge["material"]["density"]
- rho = (N_materialtmp[E_source[i]].rho + N_materialtmp[E_target[i]].rho) / 2.0
- mass = length * rho * E_currentTransverseArea[i]
-
-
- area=edge["material"]["area"]
- # mass=1e-6
-
- loaded=0.0
- if(haskey(edge, "loaded"))
- loaded=edge["loaded"]
- end
-
-
-
-
-
- strainRatio=(N_material[E_source[i]].E / N_material[E_target[i]].E)
- linear=(N_material[E_source[i]].linear && N_material[E_target[i]].linear)
- poisson=(N_material[E_source[i]].poisson || N_material[E_target[i]].poisson)
- # epsilonFail=(N_material[E_source[i]].epsilonFail+N_material[E_target[i]].epsilonFail)/2.0 #TODO CHANGE TO SMALLEST
- b=sqrt(area)
- h=sqrt(area)
- E_currentTransverseArea[i]=b*h
-
- linear=true
- if haskey(setup,"linear")
- linear=setup["linear"]
- end
- cTE=0.0 #Coefficient of thermal expansion
- if haskey(edge,"cTE")
- cTE=edge["cTE"]
- end
- cTE=N_material[E_source[i]].cTE+N_material[E_target[i]].cTE
- if haskey(edge,"material")
- if haskey(edge["material"],"cTE")
- if edge["material"]["cTE"]>0.0
- cTE=edge["material"]["cTE"]
- end
- end
- end
-
- E_material[i]=edgeMaterial(E,mass,nu,rho,b,h,length,loaded,strainRatio,linear,poisson,cTE)
-
- #non linear from data
- # todo cleanup
- if !linear
- plasticModulus=1e4
- # yieldStress=1e5
- # failureStress=-1
-
- yieldStress=1e5
- # failureStress=23e4
- failureStress=1.1e5
- # E_material[i]=setModelBilinear(E_material[i], plasticModulus, yieldStress,failureStress)
-
-
- strainData=[0.0, 0.1,0.5, 1.1]
- stressData=[0.0, 100000.0,500000.0, 110000.0]
-
- strainData=[0.0, 0.1, 0.5, 0.9, -1]
- stressData=[0.0, 100000.0,500000.0,450000.0, -1]
-
-
- strainData=[0.0, 0.1, 0.3, 0.7, -1]
- stressData=[0.0, 1e5,5e5,6e5, -1]
-
- strainData=[0.0, 0.1, 0.5, 0.9, -1]
- stressData=[0.0, 1e5,5e5,10e5, -1]
-
- strainData=[0.0,0.1,0.25, 0.3, 0.95, -1]
- stressData=[0.0,1e5,25e4, 5e5, 6e5, -1]
-
- strainData=[0.0,0.1,0.25, 0.3, 0.5, -1]
- stressData=[0.0,1e5,25e4, 25e4, 25e4, -1]
-
-
- strainData=[0.0, 1.0*0.25, 1.0*0.5, 1.0*0.75, 1.0*0.9, -1]
- stressData=[0.0, 1e5*0.25, 1e5*0.5, 1e5*0.75, 1e5*0.9, -1]
-
- strainData=[0.0, 1.0*0.1, 1.0*0.2, 1.0*0.4, 1.0*0.75, -1]
- stressData=[0.0, 1e5*0.1, 1e5*0.2, 5e5*0.4, 5e5*0.75, -1]
-
-
- dataPointCount=8
-
- strainData=[0.0, 1.0*0.1, 1.0*0.2, 1.0*0.4, 1.0*0.6, 1.0*0.7, 1.0*0.9, -1]
- stressData=[0.0, 1e5*0.1, 1e5*0.2, 2e5 , 3.6e5 , 5e5 , 7.2e5 , -1]
-
-
- # strainData=[0.0, 1.0*0.1, 1.0*0.3, 1.0*0.5, 1.0*0.7, 1.0*0.9, 1.0*0.95, -1]
- # youngsData=[0.0, 0.0, 1e5, 9e5, 8e5, 1.3e6, 1.15e6,4e5,1e6]
-
- strainData=[0.0, 1.0*0.1, 1.0*0.2, 1.0*0.4, 1.0*0.6, 1.0*0.8, 1.0*0.95, 1.0]
- youngsData=[0.0, 0.0, 1e6, 1e6, 1e6, 9e5, 8e5, 7e5]
- stressData=[0.0, 1e5*0.1, 1e5*0.2, 1e5*2.2, 1e5*4.1, 1e5*6.0, 1e5*7.1, 1e5*7.5]
-
- strainData=[0.0, 1.0*0.1, 1.0*0.2, 1.0*0.4, 1.0*0.6, 1.0*0.8, 1.0*0.95, 1.0]
- youngsData=[0.0, 0.0, 1e6, 1e6, 1e6, 9e5, 8e5, 7e5]
-
-
-
- stressData=[0.0, 1e5*0.1, 1e5*0.2]
- for i= 4:dataPointCount
- append!(stressData,[youngsData[i]*(strainData[i]-strainData[i-1])+stressData[i-1]])
- end
- # append!(stressData,[-1])
- # append!(stressData,[-1])
-
- strainData=[0.0, 1.0*0.1, 1.0*0.2, 1.0*0.4, 1.0*0.6, 1.0*0.8, 1.0*0.95, -1.0]
- youngsData=[0.0, 0.0, 1e4, 5e4, 1e5, 5e5, 8e5, 1e5]
-
-
-
- stressData=[0.0, 1e5*0.1]
- for i= 3:dataPointCount-1
- append!(stressData,[youngsData[i]*(strainData[i]-strainData[i-1])+stressData[i-1]])
- end
-
- append!(stressData,[-1])
-
-
-
- if i==1
- println(stressData)
- end
-
- strainData=[0.0, 1.0*0.1, 1.0*0.2, 1.0*0.4, 1.0*0.6, 1.0*0.8, 1.0*0.95, -1.0]
- stressData=[0.0, 0.05, 0.1, 0.4, 0.6, 0.9, 1.2, -1.0e-5].*1e5
-
- strainData=[0.0, 1.0*0.05, 1.0*0.1, 1.0*0.2, 1.0*0.3, 1.0*0.4, 1.0*0.5, -1]
- stressData=[0.0, 1e5*0.05, 1e5*0.1, 1e5*0.2, 1e5*0.3, 1e5*0.4, 1e5*0.5, -1]
-
- strainData=[0.0, 0.1, 0.3, 0.7,0.75,0.8, 0.9, -1]
- stressData=[0.0, 1e5, 5e5, 6e5,6.7e5,7e5,7.5e5, -1]
-
- dataPointCount=6
-
- # strainData=[0.0, 0.2, 0.4, 0.7, 1.2, 1.8]
- # stressData=[0.0, 2e5 ,4e5, 7e5, 10e5, 18e5]
-
-
-
- # strainData=[0.0, 0.2, 0.3, 0.6, 0.9, 1.8]
- # stressData=[0.0, 2e5 ,3e5, 8e5, 11e5, 18e5]
-
- # strainData=[0.0, 0.2, 0.4, 0.6, 0.8, 1.8]
- # stressData=[0.0, 2e5 ,4e5, 9e5, 8e5, 10e5]
-
- strainData=[0.0, 0.2, 0.4, 0.7, 1.2, 1.8]
- stressData=[0.0, 2e5 ,4e5, 4.5e5, 5e5, 6e5]
-
- strainData=[0.0, 0.1, 0.2, 0.5, 0.6, 1.2]
- stressData=[0.0, 1e5 ,2e5, 2.5e5, 1.0e5, 0.7e5]
-
- strainData=[0.0, 0.1, 0.2, 0.5, 0.8, 1.2]
- stressData=[0.0, 1e5 ,2e5, 3.0e5, 7.0e5, 12e5]
-
-
-
- # if i==1
- # strainn=0.1
- # nu=0.3
- # DataCount =dataPointCount
- # poisson=true
- # transverseStrainSumm=0.001
-
- # for i = 3:DataCount #(i=2; i<DataCount; i++) #go through each segment in the material model (skipping the first segment because it has already been handled.
- # println(i)
- # if (strainn <= strainData[i] || i==DataCount) #if in the segment ending with this point (or if this is the last point extrapolate out)
- # Perc = (strainn-strainData[i-1])/(strainData[i]-strainData[i-1]);
- # println("Perc: $Perc")
- # basicStress = stressData[i-1] + Perc*(stressData[i]-stressData[i-1]);
- # println("basicStress: $basicStress")
- # if (!poisson || nu == 0.0)
- # basicStress;
- # else #accounting for volumetric effects
- # modulus = (stressData[i]-stressData[i-1])/(strainData[i]-strainData[i-1]);
- # println("modulus: $modulus")
- # modulusHat = modulus/((1.0-2.0*nu)*(1.0+nu));
- # effectiveStrain = basicStress/modulus; #this is the strain at which a simple linear stress strain line would hit this point at the definied modulus
- # effectiveTransverseStrainSum = transverseStrainSumm*(effectiveStrain/strainn);
- # m=modulusHat*((1.0-nu)*effectiveStrain + nu*effectiveTransverseStrainSum);
- # println("m: $m")
- # println()
-
- # end
- # end
- # end
- # end
-
-
-
-
-
- E_material[i]=setModel(E_material[i],dataPointCount, strainData, stressData)
- # println(E_material[i].strainData)
- # println(E_material[i].stressData)
- # println(E_material[i].epsilonFail)
- # println(length)
-
-
- end
-
-
- E_source[i]=edge["source"]+1
- E_target[i]=edge["target"]+1
-
- i=i+1
- end
-
- ##fixing mass calculation
- for (i, nodes) in enumerate(nodes)
- mass = 0
- for id in N_edgeID[i,1:N_currEdge[i]]
- if id != -1
- mass += E_material[id].rho * E_material[id].area * E_material[id].L / 2
- end
- end
- N_material[i] = voxelMaterial(N_materialtmp[i].E, mass, N_materialtmp[i].nu, N_materialtmp[i].rho, N_materialtmp[i].zetaInternal, N_materialtmp[i].zetaGlobal, N_materialtmp[i].zetaCollision, N_materialtmp[i].muStatic, N_materialtmp[i].muKinetic, N_materialtmp[i].nomSize, N_materialtmp[i].linear, N_materialtmp[i].poisson, N_materialtmp[i].cTE, N_materialtmp[i].scale)
- end
-
- #tendons
- if !haskey(setup,"tendonIds")
- setup["tendonIds"]=[]
- end
- if !haskey(setup,"mu")
- setup["mu"]=0.5
- end
- tendonIds=setup["tendonIds"]
- mu=setup["mu"]
-
-
- end
-
- function simulateParallel!(metavoxel,maxNumTimeSteps,dt,sys="GPU")
- val=(maxNumTimeSteps+1)/100000
- for i in 1:maxNumTimeSteps
- if (mod(i,(maxNumTimeSteps+1)/val)==0)
- if (logging)
- display("$((i/val/100))%")
- end
- end
- doTimeStep!(metavoxel,dt,i,sys)
- if (mod(i,saveEvery)==0)
- #append!(displacements,[Array(metavoxel["N_displacementGPU"])])
- updateDataAndSave!(metavoxel,setup,"$(folderPath)$(numFile).json",sys)
- numFile+=1
- if numFile>maxNumFiles
- numFile=0
- end
- end
- end
-
- end
-
- ########
- voxCount=0
- linkCount=0
- nodes = setup["nodes"]
- edges = setup["edges"]
- voxCount=size(nodes)[1]
- linkCount=size(edges)[1]
- strain =0 #todooo moveeee
- maxNumEdges=24
-
- ############# nodes
- N_position=fill(Vector3(),voxCount)
- N_restrained=fill(DOF(), voxCount)
- N_displacement=fill(Vector3(),voxCount)
- N_angle=fill(Vector3(),voxCount)
- N_currPosition=fill(Vector3(),voxCount)
- N_linMom=fill(Vector3(),voxCount)
- N_angMom=fill(Vector3(),voxCount)
- N_intForce=fill(Vector3(),voxCount)
- N_intMoment=fill(Vector3(),voxCount)
- N_moment=fill(Vector3(),voxCount)
- N_force=fill(Vector3(),voxCount)
- N_fixedDisplacement=fill(Vector3(),voxCount)
- N_orient=fill(Quaternion(),voxCount)
- N_edgeID=fill(-1,(voxCount,maxNumEdges))
- N_edgeFirst=fill(true,(voxCount,maxNumEdges))
- N_currEdge=fill(1,voxCount)
- N_material=fill(voxelMaterial(),voxCount)
- N_materialtmp=fill(voxelMaterial(),voxCount)
- N_poissonStrain=fill(Vector3(),voxCount)
-
- ############# edges
- E_source=fill(0,linkCount)
- E_target=fill(0,linkCount)
- E_sourceNodalCoordinate=fill(0,linkCount)
- E_targetNodalCoordinate=fill(0,linkCount)
- E_stress=fill(0.0,linkCount)
- E_axis=fill(Vector3(1.0,0.0,0.0),linkCount)
- E_currentRestLength=fill(0.0,linkCount)
- E_pos2=fill(Vector3(),linkCount)
- E_angle1v=fill(Vector3(),linkCount)
- E_angle2v=fill(Vector3(),linkCount)
- E_angle1=fill(Quaternion(),linkCount)
- E_angle2=fill(Quaternion(),linkCount)
-
- E_intForce1=fill(Vector3(),linkCount)
- E_intMoment1=fill(Vector3(),linkCount)
-
- E_intForce2=fill(Vector3(),linkCount)
- E_intMoment2=fill(Vector3(),linkCount)
- E_damp=fill(false,linkCount)
- E_smallAngle=fill(true,linkCount)
- E_material=fill(edgeMaterial(),linkCount)
-
- E_strain=fill(0.0,linkCount)
- E_maxStrain=fill(0.0,linkCount)
- E_strainOffset=fill(0.0,linkCount)
- E_currentTransverseArea=fill(0.0,linkCount)
- E_currentTransverseStrainSum=fill(0.0,linkCount)# TODO remove ot incorporate
-
- tendonIds=[]
- mu=0.6;
-
- #################################################################
- initialize!(setup)
- #################################################################
- if (sys=="GPU")
- ########################## turn to cuda arrays
- ############# nodes
- N_positionGPU= CuArray(N_position)
- N_restrainedGPU= CuArray(N_restrained)
- N_displacementGPU= CuArray(N_displacement)
- N_angleGPU= CuArray(N_angle)
- N_currPositionGPU= CuArray(N_currPosition)
- N_linMomGPU= CuArray(N_linMom)
- N_angMomGPU= CuArray(N_angMom)
- N_intForceGPU= CuArray(N_intForce)
- N_intMomentGPU= CuArray(N_intMoment)
- N_momentGPU= CuArray(N_moment)
- N_forceGPU= CuArray(N_force)
- N_fixedDisplacementGPU= CuArray(N_fixedDisplacement)
- N_orientGPU= CuArray(N_orient)
- N_edgeIDGPU= CuArray(N_edgeID)
- N_edgeFirstGPU= CuArray(N_edgeFirst)
- N_materialGPU= CuArray(N_material)
- N_poissonStrainGPU= CuArray(N_poissonStrain)
-
-
- ############# edges
- E_sourceGPU= CuArray(E_source)
- E_targetGPU= CuArray(E_target)
- E_sourceNodalCoordinateGPU= CuArray(E_sourceNodalCoordinate)
- E_targetNodalCoordinateGPU= CuArray(E_targetNodalCoordinate)
- E_stressGPU= CuArray(E_stress)
- E_axisGPU= CuArray(E_axis)
- E_currentRestLengthGPU= CuArray(E_currentRestLength)
- E_pos2GPU= CuArray(E_pos2)
- E_angle1vGPU= CuArray(E_angle1v)
- E_angle2vGPU= CuArray(E_angle2v)
- E_angle1GPU= CuArray(E_angle1)
- E_angle2GPU= CuArray(E_angle2)
-
- E_strainGPU= CuArray(E_strain)
- E_maxStrainGPU= CuArray(E_maxStrain)
- E_strainOffsetGPU= CuArray(E_strainOffset)
- E_currentTransverseAreaGPU= CuArray(E_currentTransverseArea)
- E_currentTransverseStrainSumGPU=CuArray(E_currentTransverseStrainSum)# TODO remove ot incorporate
-
- E_intForce1GPU= CuArray(E_intForce1)
- E_intMoment1GPU= CuArray(E_intMoment1)
- E_intForce2GPU= CuArray(E_intForce2)
- E_intMoment2GPU= CuArray(E_intMoment2)
- E_dampGPU= CuArray(E_damp)
- E_smallAngleGPU= CuArray(E_smallAngle)
- E_materialGPU= CuArray(E_material)
-
-
-
- #########################################
- metavoxel = Dict(
- "N_positionGPU" => N_positionGPU,
- "N_restrainedGPU" => N_restrainedGPU,
- "N_displacementGPU" => N_displacementGPU,
- "N_angleGPU" => N_angleGPU,
- "N_currPositionGPU" => N_currPositionGPU,
- "N_linMomGPU" => N_linMomGPU,
- "N_angMomGPU" => N_angMomGPU,
- "N_intForceGPU" => N_intForceGPU,
- "N_intMomentGPU" => N_intMomentGPU,
- "N_momentGPU" => N_momentGPU,
- "N_forceGPU" => N_forceGPU,
- "N_fixedDisplacementGPU"=>N_fixedDisplacementGPU,
- "N_orientGPU" => N_orientGPU,
- "N_edgeIDGPU" => N_edgeIDGPU,
- "N_edgeFirstGPU" => N_edgeFirstGPU,
- "N_materialGPU"=> N_materialGPU,
- "N_poissonStrainGPU"=> N_poissonStrainGPU,
-
- "E_sourceGPU" =>E_sourceGPU,
- "E_targetGPU" =>E_targetGPU,
- "E_sourceNodalCoordinateGPU" =>E_sourceNodalCoordinateGPU,
- "E_targetNodalCoordinateGPU" =>E_targetNodalCoordinateGPU,
- "E_stressGPU" =>E_stressGPU,
- "E_axisGPU" =>E_axisGPU,
- "E_currentRestLengthGPU" =>E_currentRestLengthGPU,
- "E_pos2GPU" =>E_pos2GPU,
- "E_angle1vGPU" =>E_angle1vGPU,
- "E_angle2vGPU" =>E_angle2vGPU,
- "E_angle1GPU" =>E_angle1GPU,
- "E_angle2GPU" =>E_angle2GPU,
-
- "E_strainGPU" =>E_strainGPU,
- "E_maxStrainGPU" =>E_maxStrainGPU,
- "E_strainOffsetGPU"=>E_strainOffsetGPU,
- "E_currentTransverseAreaGPU" =>E_currentTransverseAreaGPU,
- "E_currentTransverseStrainSumGPU" =>E_currentTransverseStrainSumGPU,
-
- "E_intForce1GPU" =>E_intForce1GPU,
- "E_intMoment1GPU" =>E_intMoment1GPU,
- "E_intForce2GPU" =>E_intForce2GPU,
- "E_intMoment2GPU" =>E_intMoment2GPU,
- "E_dampGPU" =>E_dampGPU,
- "E_smallAngleGPU" =>E_smallAngleGPU,
- "E_materialGPU" =>E_materialGPU,
- "tendonIds" =>tendonIds,
- "mu"=>mu
- )
- else
- # CPU
- metavoxel = Dict(
- "N_position" => N_position,
- "N_restrained" => N_restrained,
- "N_displacement" => N_displacement,
- "N_angle" => N_angle,
- "N_currPosition" => N_currPosition,
- "N_linMom" => N_linMom,
- "N_angMom" => N_angMom,
- "N_intForce" => N_intForce,
- "N_intMoment" => N_intMoment,
- "N_moment" => N_moment,
- "N_force" => N_force,
- "N_fixedDisplacement"=>N_fixedDisplacement,
- "N_orient" => N_orient,
- "N_edgeID" => N_edgeID,
- "N_edgeFirst" => N_edgeFirst,
- "N_material"=> N_material,
- "N_poissonStrain"=> N_poissonStrain,
-
- "E_source" =>E_source,
- "E_target" =>E_target,
- "E_sourceNodalCoordinate" =>E_sourceNodalCoordinate,
- "E_targetNodalCoordinate" =>E_targetNodalCoordinate,
- "E_stress" =>E_stress,
- "E_axis" =>E_axis,
- "E_currentRestLength" =>E_currentRestLength,
- "E_pos2" =>E_pos2,
- "E_angle1v" =>E_angle1v,
- "E_angle2v" =>E_angle2v,
- "E_angle1" =>E_angle1,
- "E_angle2" =>E_angle2,
-
- "E_strain" =>E_strain,
- "E_maxStrain" =>E_maxStrain,
- "E_strainOffset"=>E_strainOffset,
- "E_currentTransverseArea" =>E_currentTransverseArea,
- "E_currentTransverseStrainSum" =>E_currentTransverseStrainSum,
-
- "E_intForce1" =>E_intForce1,
- "E_intMoment1" =>E_intMoment1,
- "E_intForce2" =>E_intForce2,
- "E_intMoment2" =>E_intMoment2,
- "E_damp" =>E_damp,
- "E_smallAngle" =>E_smallAngle,
- "E_material" =>E_material,
-
- "tendonIds" =>tendonIds,
- "mu"=>mu
- )
- end
-
- #########################################
-
- #todo make recommended timestep a function
- dt=0.0251646
- E = setup["edges"][1]["material"]["stiffness"] # MPa
- s=round(sqrt(setup["edges"][1]["material"]["area"] );digits=10)
- # s=E_material[1].L
-
- # s=setup["voxelSize"]
- mass=N_material[1].mass
-
- if(!setup["hierarchical"])
- s=E_material[1].L
- mass=round(setup["edges"][1]["material"]["area"]*E_material[1].L *setup["edges"][1]["material"]["density"];digits=10)
- end
- MaxFreq2=E*s/mass
- if(setup["poisson"])
- # mat->_eHat*currentTransverseArea/((strain+1.0)*currentRestLength)
- eHat=E_material[1].eHat
- temp=eHat*E_material[1].b*E_material[1].h/((0.0+1.0)*E_material[1].L)
- MaxFreq2=temp/mass
- end
-
- dt= 1.0/(6.283185*sqrt(MaxFreq2))
- # dt=dt*4 #manual speedup
- if (logging)
- println("dt: $dt, s: $s, mass: $mass, momentInertiaInverse: $(N_material[1].momentInertiaInverse)")
- end
- setup["dt"]=dt
-
- numFile=0
- numSaves=0
- t=@timed doTimeStep!(metavoxel,dt,0,sys)
- time=t[2]
-
- if (logging)
- println("first timestep took $time seconds")
- end
- t=@timed simulateParallel!(metavoxel,maxNumTimeSteps-1,dt,sys)
- time=t[2]
-
- setup["maxNumFiles"]=numSaves
- if (logging)
- println("ran $voxCount nodes and $linkCount edges for $maxNumTimeSteps time steps took $time seconds")
- end
- return
-end
-
-########################################
-
-function doTimeStep!(metavoxel,dt,currentTimeStep,sys="GPU")
- if (sys=="GPU")
- # update forces: go through edges, get currentposition from nodes, calc pos2 and update stresses and interior forces of nodes
- run_updateEdgesGPU!(dt,currentTimeStep,
- metavoxel["E_sourceGPU"],
- metavoxel["E_targetGPU"],
- metavoxel["E_sourceNodalCoordinateGPU"],
- metavoxel["E_targetNodalCoordinateGPU"],
- metavoxel["E_stressGPU"],
- metavoxel["E_axisGPU"],
- metavoxel["E_currentRestLengthGPU"],
- metavoxel["E_pos2GPU"],
- metavoxel["E_angle1vGPU"],
- metavoxel["E_angle2vGPU"],
- metavoxel["E_angle1GPU"],
- metavoxel["E_angle2GPU"],
- metavoxel["E_intForce1GPU"],
- metavoxel["E_intMoment1GPU"],
- metavoxel["E_intForce2GPU"],
- metavoxel["E_intMoment2GPU"],
- metavoxel["E_dampGPU"],
- metavoxel["E_smallAngleGPU"],
- metavoxel["E_materialGPU"],
- metavoxel["E_strainGPU"],
- metavoxel["E_maxStrainGPU"],
- metavoxel["E_strainOffsetGPU"],
- metavoxel["E_currentTransverseAreaGPU"],
- metavoxel["E_currentTransverseStrainSumGPU"],
- metavoxel["N_currPositionGPU"],
- metavoxel["N_orientGPU"],
- metavoxel["N_poissonStrainGPU"]
- )
-
- # update forces on tendons
- run_updateTendonsGPU!(dt,currentTimeStep,
- metavoxel["N_positionGPU"],
- metavoxel["N_forceGPU"],
- metavoxel["N_currPositionGPU"],
- metavoxel["tendonIds"],
- metavoxel["mu"]
- )
-
- # update forces: go through nodes and update interior force (according to int forces from edges), integrate and update currpos
- run_updateNodesGPU!(dt,currentTimeStep,
- metavoxel["N_positionGPU"],
- metavoxel["N_restrainedGPU"],
- metavoxel["N_displacementGPU"],
- metavoxel["N_angleGPU"],
- metavoxel["N_currPositionGPU"],
- metavoxel["N_linMomGPU"],
- metavoxel["N_angMomGPU"],
- metavoxel["N_intForceGPU"],
- metavoxel["N_intMomentGPU"],
- metavoxel["N_forceGPU"],
- metavoxel["N_fixedDisplacementGPU"],
- metavoxel["N_momentGPU"],
- metavoxel["N_orientGPU"],
- metavoxel["N_edgeIDGPU"],
- metavoxel["N_edgeFirstGPU"],
- metavoxel["N_materialGPU"],
- metavoxel["N_poissonStrainGPU"],
- metavoxel["E_intForce1GPU"],
- metavoxel["E_intMoment1GPU"],
- metavoxel["E_intForce2GPU"],
- metavoxel["E_intMoment2GPU"],
- metavoxel["E_axisGPU"],
- metavoxel["E_strainGPU"],
- metavoxel["E_materialGPU"],
- metavoxel["E_maxStrainGPU"]
- )
-
- else
- # CPU
- # update forces: go through edges, get currentposition from nodes, calc pos2 and update stresses and interior forces of nodes
- updateEdgesCPU!(dt,currentTimeStep,
- metavoxel["E_source"],
- metavoxel["E_target"],
- metavoxel["E_sourceNodalCoordinate"],
- metavoxel["E_targetNodalCoordinate"],
- metavoxel["E_stress"],
- metavoxel["E_axis"],
- metavoxel["E_currentRestLength"],
- metavoxel["E_pos2"],
- metavoxel["E_angle1v"],
- metavoxel["E_angle2v"],
- metavoxel["E_angle1"],
- metavoxel["E_angle2"],
- metavoxel["E_intForce1"],
- metavoxel["E_intMoment1"],
- metavoxel["E_intForce2"],
- metavoxel["E_intMoment2"],
- metavoxel["E_damp"],
- metavoxel["E_smallAngle"],
- metavoxel["E_material"],
- metavoxel["E_strain"],
- metavoxel["E_maxStrain"],
- metavoxel["E_strainOffset"],
- metavoxel["E_currentTransverseArea"],
- metavoxel["E_currentTransverseStrainSum"],
- metavoxel["N_currPosition"],
- metavoxel["N_orient"],
- metavoxel["N_poissonStrain"]
- )
-
- # update forces on tendons
- updateTendonsCPU!(dt,currentTimeStep,
- metavoxel["N_position"],
- metavoxel["N_force"],
- metavoxel["N_currPosition"],
- metavoxel["tendonIds"],
- metavoxel["mu"]
- )
-
- # update forces: go through nodes and update interior force (according to int forces from edges), integrate and update currpos
- updateNodesCPU!(dt,currentTimeStep,
- metavoxel["N_position"],
- metavoxel["N_restrained"],
- metavoxel["N_displacement"],
- metavoxel["N_angle"],
- metavoxel["N_currPosition"],
- metavoxel["N_linMom"],
- metavoxel["N_angMom"],
- metavoxel["N_intForce"],
- metavoxel["N_intMoment"],
- metavoxel["N_force"],
- metavoxel["N_fixedDisplacement"],
- metavoxel["N_moment"],
- metavoxel["N_orient"],
- metavoxel["N_edgeID"],
- metavoxel["N_edgeFirst"],
- metavoxel["N_material"],
- metavoxel["N_poissonStrain"],
- metavoxel["E_intForce1"],
- metavoxel["E_intMoment1"],
- metavoxel["E_intForce2"],
- metavoxel["E_intMoment2"],
- metavoxel["E_axis"],
- metavoxel["E_strain"],
- metavoxel["E_material"],
- metavoxel["E_maxStrain"]
- )
-
-
- end
-
-end
+# Amira Abdel-Rahman
+# (c) Massachusetts Institute of Technology 2020
+#################################################################
+function runMetaVoxels!(setup,folderPath,sys="GPU")
+
+ maxNumTimeSteps=setup["numTimeSteps"]
+ maxNumFiles=setup["maxNumFiles"]
+
+ saveEvery=round(maxNumTimeSteps/maxNumFiles)
+ maxNumFiles=round(maxNumTimeSteps/saveEvery)-1
+ setup["maxNumFiles"]=maxNumFiles
+
+ function initialize!(setup)
+ nodes = setup["nodes"]
+ edges = setup["edges"]
+
+ i=1
+ for node in nodes
+ if node["parent"]=="11" || node["parent"]=="" #to ignore child nodes that are there for visualization
+ # element=parse(Int,node["id"][2:end])
+ node["position"]["y"]=node["position"]["y"]+0.0
+ node["position"]["z"]=node["position"]["z"]+0.0
+ N_position[i]=Vector3(node["position"]["x"],node["position"]["y"],node["position"]["z"])
+ N_restrained[i]=DOF(node["restrained_degrees_of_freedom"][1],node["restrained_degrees_of_freedom"][2],node["restrained_degrees_of_freedom"][3],node["restrained_degrees_of_freedom"][4],node["restrained_degrees_of_freedom"][5],node["restrained_degrees_of_freedom"][6])
+ N_displacement[i]=Vector3(node["displacement"]["x"],node["displacement"]["y"],node["displacement"]["z"])
+ N_angle[i]=Vector3(node["angle"]["x"],node["angle"]["y"],node["angle"]["z"])
+ N_force[i]=Vector3(node["force"]["x"],node["force"]["y"],node["force"]["z"])
+ N_fixedDisplacement[i]=Vector3(node["fixedDisplacement"]["x"],node["fixedDisplacement"]["y"],node["fixedDisplacement"]["z"])
+ N_currPosition[i]=Vector3(node["position"]["x"],node["position"]["y"],node["position"]["z"])
+
+ E=2000
+ E = node["material"]["stiffness"] # MPa
+ nu=0.0
+ if haskey(node["material"], "poissonRatio") #todo change material data to nodes
+ nu= node["material"]["poissonRatio"]
+ end
+ # println(nu)
+
+ rho=1e3
+ rho = node["material"]["density"] # MPa
+
+ momentInertiaInverse=1.92e-6
+ inertia=1/momentInertiaInverse
+
+
+ zetaInternal=1.0
+ zetaGlobal=0.2
+ if haskey(setup,"globalDamping")
+ zetaGlobal=setup["globalDamping"]
+ end
+ zetaCollision=0.0
+ muStatic= 2.0
+ muKinetic= 0.1
+ nomSize=round(sqrt(node["material"]["area"] );digits=10)
+ # nomSize=nomSize*2.0 #why??
+ mass=round(nomSize*nomSize*nomSize *rho;digits=10)
+
+
+ linear=true
+ poisson=false
+ if haskey(setup,"linear")
+ linear=setup["linear"]
+ end
+ if haskey(setup,"poisson")
+ poisson= setup["poisson"]
+ end
+ cTE=0.0 #Coefficient of thermal expansion
+ if haskey(setup,"thermal") # later change for node matrial data
+ if setup["thermal"]
+ cTE=node["material"]["cTE"]
+ end
+ end
+ # print("poisson $poisson")
+ # epsilonFail=E*1000.0
+
+ scale =0
+ if haskey(setup,"multiscale")
+ if setup["multiscale"]
+ scale=node["scale"]
+ end
+ nomSize=nomSize*scale
+ mass=round(nomSize*nomSize*nomSize *rho;digits=10)
+ end
+ N_material[i]= voxelMaterial(E, mass, nu, rho, zetaInternal, zetaGlobal, zetaCollision, muStatic, muKinetic, nomSize, linear, poisson, cTE, scale)
+ N_materialtmp[i] = voxelMaterial(E, mass, nu, rho, zetaInternal, zetaGlobal, zetaCollision, muStatic, muKinetic, nomSize, linear, poisson, cTE, scale)
+
+
+ i=i+1
+ else
+ # node["position"]["x"]= node["position"]["x"]*setup["scale"] #for export
+ # node["position"]["y"]= node["position"]["y"]*setup["scale"] #for export
+ # node["position"]["z"]= node["position"]["z"]*setup["scale"] #for export
+ node["position"]["x"]= node["position"]["x"] #for export
+ node["position"]["y"]= node["position"]["y"] #for export
+ node["position"]["z"]= node["position"]["z"] #for export
+ end
+ end
+
+ i=1
+ for edge in edges
+ # element=parse(Int,edge["id"][2:end])
+
+ # find the nodes that the elements connects
+ fromNode = nodes[edge["source"]+1]
+ toNode = nodes[edge["target"]+1]
+
+ sourceRelPos=Vector3(0,0,0)
+ targetRelPos=Vector3(0,0,0)
+
+ if haskey(setup,"multiscale")
+ E_sourceNodalCoordinate[i]=edge["sourceNodalCoordinate"]
+ E_targetNodalCoordinate[i]=edge["targetNodalCoordinate"]
+ sourceRelPos=getRelativePosition(E_sourceNodalCoordinate[i],setup["voxelSize"]/2.0)
+ targetRelPos=getRelativePosition(E_targetNodalCoordinate[i],setup["voxelSize"]/2.0)
+ end
+
+
+
+ node1 = [fromNode["position"]["x"]+sourceRelPos.x fromNode["position"]["y"]+sourceRelPos.y fromNode["position"]["z"]+sourceRelPos.z]
+ node2 = [toNode["position"]["x"]+targetRelPos.x toNode["position"]["y"]+targetRelPos.y toNode["position"]["z"]+targetRelPos.z]
+
+ length=norm(node2-node1)
+ axis=normalize(collect(Iterators.flatten(node2-node1))) # pre-calculate the axis
+
+ E_source[i]=edge["source"]+1
+ E_target[i]=edge["target"]+1
+ E_axis[i]=Vector3(axis[1],axis[2],axis[3])
+ E_currentRestLength[i]=length #?????? todo change
+
+ N_edgeID[E_source[i],N_currEdge[E_source[i]]]=i
+ N_edgeFirst[E_source[i],N_currEdge[E_source[i]]]=true
+ N_currEdge[E_source[i]]+=1
+
+ N_edgeID[E_target[i],N_currEdge[E_target[i]]]=i
+ N_edgeFirst[E_target[i],N_currEdge[E_target[i]]]=false
+ N_currEdge[E_target[i]]+=1
+
+ E=edge["material"]["stiffness"]
+ E=(N_material[E_source[i]].E+N_material[E_target[i]].E)/2.0
+ mass=(N_material[E_source[i]].mass+N_material[E_target[i]].mass)/2.0 #not used anymore
+ nu=(N_material[E_source[i]].nu+N_material[E_target[i]].nu)/2.0
+ rho=edge["material"]["density"]
+ rho=(N_material[E_source[i]].rho+N_material[E_target[i]].rho)/2.0
+
+ E = (N_materialtmp[E_source[i]].E + N_materialtmp[E_target[i]].E) / 2.0
+ nu = (N_materialtmp[E_source[i]].nu + N_materialtmp[E_target[i]].nu) / 2.0
+ rho = edge["material"]["density"]
+ rho = (N_materialtmp[E_source[i]].rho + N_materialtmp[E_target[i]].rho) / 2.0
+ mass = length * rho * E_currentTransverseArea[i]
+
+
+ area=edge["material"]["area"]
+ # mass=1e-6
+
+ loaded=0.0
+ if(haskey(edge, "loaded"))
+ loaded=edge["loaded"]
+ end
+
+
+
+
+
+ strainRatio=(N_material[E_source[i]].E / N_material[E_target[i]].E)
+ linear=(N_material[E_source[i]].linear && N_material[E_target[i]].linear)
+ poisson=(N_material[E_source[i]].poisson || N_material[E_target[i]].poisson)
+ # epsilonFail=(N_material[E_source[i]].epsilonFail+N_material[E_target[i]].epsilonFail)/2.0 #TODO CHANGE TO SMALLEST
+ b=sqrt(area)
+ h=sqrt(area)
+ E_currentTransverseArea[i]=b*h
+
+ linear=true
+ if haskey(setup,"linear")
+ linear=setup["linear"]
+ end
+ cTE=0.0 #Coefficient of thermal expansion
+ if haskey(edge,"cTE")
+ cTE=edge["cTE"]
+ end
+ cTE=N_material[E_source[i]].cTE+N_material[E_target[i]].cTE
+ if haskey(edge,"material")
+ if haskey(edge["material"],"cTE")
+ if edge["material"]["cTE"]>0.0
+ cTE=edge["material"]["cTE"]
+ end
+ end
+ end
+
+ E_material[i]=edgeMaterial(E,mass,nu,rho,b,h,length,loaded,strainRatio,linear,poisson,cTE)
+
+ #non linear from data
+ # todo cleanup
+ if !linear
+ plasticModulus=1e4
+ # yieldStress=1e5
+ # failureStress=-1
+
+ yieldStress=1e5
+ # failureStress=23e4
+ failureStress=1.1e5
+ # E_material[i]=setModelBilinear(E_material[i], plasticModulus, yieldStress,failureStress)
+
+
+ strainData=[0.0, 0.1,0.5, 1.1]
+ stressData=[0.0, 100000.0,500000.0, 110000.0]
+
+ strainData=[0.0, 0.1, 0.5, 0.9, -1]
+ stressData=[0.0, 100000.0,500000.0,450000.0, -1]
+
+
+ strainData=[0.0, 0.1, 0.3, 0.7, -1]
+ stressData=[0.0, 1e5,5e5,6e5, -1]
+
+ strainData=[0.0, 0.1, 0.5, 0.9, -1]
+ stressData=[0.0, 1e5,5e5,10e5, -1]
+
+ strainData=[0.0,0.1,0.25, 0.3, 0.95, -1]
+ stressData=[0.0,1e5,25e4, 5e5, 6e5, -1]
+
+ strainData=[0.0,0.1,0.25, 0.3, 0.5, -1]
+ stressData=[0.0,1e5,25e4, 25e4, 25e4, -1]
+
+
+ strainData=[0.0, 1.0*0.25, 1.0*0.5, 1.0*0.75, 1.0*0.9, -1]
+ stressData=[0.0, 1e5*0.25, 1e5*0.5, 1e5*0.75, 1e5*0.9, -1]
+
+ strainData=[0.0, 1.0*0.1, 1.0*0.2, 1.0*0.4, 1.0*0.75, -1]
+ stressData=[0.0, 1e5*0.1, 1e5*0.2, 5e5*0.4, 5e5*0.75, -1]
+
+
+ dataPointCount=8
+
+ strainData=[0.0, 1.0*0.1, 1.0*0.2, 1.0*0.4, 1.0*0.6, 1.0*0.7, 1.0*0.9, -1]
+ stressData=[0.0, 1e5*0.1, 1e5*0.2, 2e5 , 3.6e5 , 5e5 , 7.2e5 , -1]
+
+
+ # strainData=[0.0, 1.0*0.1, 1.0*0.3, 1.0*0.5, 1.0*0.7, 1.0*0.9, 1.0*0.95, -1]
+ # youngsData=[0.0, 0.0, 1e5, 9e5, 8e5, 1.3e6, 1.15e6,4e5,1e6]
+
+ strainData=[0.0, 1.0*0.1, 1.0*0.2, 1.0*0.4, 1.0*0.6, 1.0*0.8, 1.0*0.95, 1.0]
+ youngsData=[0.0, 0.0, 1e6, 1e6, 1e6, 9e5, 8e5, 7e5]
+ stressData=[0.0, 1e5*0.1, 1e5*0.2, 1e5*2.2, 1e5*4.1, 1e5*6.0, 1e5*7.1, 1e5*7.5]
+
+ strainData=[0.0, 1.0*0.1, 1.0*0.2, 1.0*0.4, 1.0*0.6, 1.0*0.8, 1.0*0.95, 1.0]
+ youngsData=[0.0, 0.0, 1e6, 1e6, 1e6, 9e5, 8e5, 7e5]
+
+
+
+ stressData=[0.0, 1e5*0.1, 1e5*0.2]
+ for i= 4:dataPointCount
+ append!(stressData,[youngsData[i]*(strainData[i]-strainData[i-1])+stressData[i-1]])
+ end
+ # append!(stressData,[-1])
+ # append!(stressData,[-1])
+
+ strainData=[0.0, 1.0*0.1, 1.0*0.2, 1.0*0.4, 1.0*0.6, 1.0*0.8, 1.0*0.95, -1.0]
+ youngsData=[0.0, 0.0, 1e4, 5e4, 1e5, 5e5, 8e5, 1e5]
+
+
+
+ stressData=[0.0, 1e5*0.1]
+ for i= 3:dataPointCount-1
+ append!(stressData,[youngsData[i]*(strainData[i]-strainData[i-1])+stressData[i-1]])
+ end
+
+ append!(stressData,[-1])
+
+
+
+ if i==1
+ println(stressData)
+ end
+
+ strainData=[0.0, 1.0*0.1, 1.0*0.2, 1.0*0.4, 1.0*0.6, 1.0*0.8, 1.0*0.95, -1.0]
+ stressData=[0.0, 0.05, 0.1, 0.4, 0.6, 0.9, 1.2, -1.0e-5].*1e5
+
+ strainData=[0.0, 1.0*0.05, 1.0*0.1, 1.0*0.2, 1.0*0.3, 1.0*0.4, 1.0*0.5, -1]
+ stressData=[0.0, 1e5*0.05, 1e5*0.1, 1e5*0.2, 1e5*0.3, 1e5*0.4, 1e5*0.5, -1]
+
+ strainData=[0.0, 0.1, 0.3, 0.7,0.75,0.8, 0.9, -1]
+ stressData=[0.0, 1e5, 5e5, 6e5,6.7e5,7e5,7.5e5, -1]
+
+ dataPointCount=6
+
+ # strainData=[0.0, 0.2, 0.4, 0.7, 1.2, 1.8]
+ # stressData=[0.0, 2e5 ,4e5, 7e5, 10e5, 18e5]
+
+
+
+ # strainData=[0.0, 0.2, 0.3, 0.6, 0.9, 1.8]
+ # stressData=[0.0, 2e5 ,3e5, 8e5, 11e5, 18e5]
+
+ # strainData=[0.0, 0.2, 0.4, 0.6, 0.8, 1.8]
+ # stressData=[0.0, 2e5 ,4e5, 9e5, 8e5, 10e5]
+
+ strainData=[0.0, 0.2, 0.4, 0.7, 1.2, 1.8]
+ stressData=[0.0, 2e5 ,4e5, 4.5e5, 5e5, 6e5]
+
+ strainData=[0.0, 0.1, 0.2, 0.5, 0.6, 1.2]
+ stressData=[0.0, 1e5 ,2e5, 2.5e5, 1.0e5, 0.7e5]
+
+ strainData=[0.0, 0.1, 0.2, 0.5, 0.8, 1.2]
+ stressData=[0.0, 1e5 ,2e5, 3.0e5, 7.0e5, 12e5]
+
+
+
+ # if i==1
+ # strainn=0.1
+ # nu=0.3
+ # DataCount =dataPointCount
+ # poisson=true
+ # transverseStrainSumm=0.001
+
+ # for i = 3:DataCount #(i=2; i<DataCount; i++) #go through each segment in the material model (skipping the first segment because it has already been handled.
+ # println(i)
+ # if (strainn <= strainData[i] || i==DataCount) #if in the segment ending with this point (or if this is the last point extrapolate out)
+ # Perc = (strainn-strainData[i-1])/(strainData[i]-strainData[i-1]);
+ # println("Perc: $Perc")
+ # basicStress = stressData[i-1] + Perc*(stressData[i]-stressData[i-1]);
+ # println("basicStress: $basicStress")
+ # if (!poisson || nu == 0.0)
+ # basicStress;
+ # else #accounting for volumetric effects
+ # modulus = (stressData[i]-stressData[i-1])/(strainData[i]-strainData[i-1]);
+ # println("modulus: $modulus")
+ # modulusHat = modulus/((1.0-2.0*nu)*(1.0+nu));
+ # effectiveStrain = basicStress/modulus; #this is the strain at which a simple linear stress strain line would hit this point at the definied modulus
+ # effectiveTransverseStrainSum = transverseStrainSumm*(effectiveStrain/strainn);
+ # m=modulusHat*((1.0-nu)*effectiveStrain + nu*effectiveTransverseStrainSum);
+ # println("m: $m")
+ # println()
+
+ # end
+ # end
+ # end
+ # end
+
+
+
+
+
+ E_material[i]=setModel(E_material[i],dataPointCount, strainData, stressData)
+ # println(E_material[i].strainData)
+ # println(E_material[i].stressData)
+ # println(E_material[i].epsilonFail)
+ # println(length)
+
+
+ end
+
+
+ E_source[i]=edge["source"]+1
+ E_target[i]=edge["target"]+1
+
+ i=i+1
+ end
+
+ ##fixing mass calculation
+ for (i, nodes) in enumerate(nodes)
+ mass = 0
+ for id in N_edgeID[i,1:N_currEdge[i]]
+ if id != -1
+ mass += E_material[id].rho * E_material[id].area * E_material[id].L / 2
+ end
+ end
+ N_material[i] = voxelMaterial(N_materialtmp[i].E, mass, N_materialtmp[i].nu, N_materialtmp[i].rho, N_materialtmp[i].zetaInternal, N_materialtmp[i].zetaGlobal, N_materialtmp[i].zetaCollision, N_materialtmp[i].muStatic, N_materialtmp[i].muKinetic, N_materialtmp[i].nomSize, N_materialtmp[i].linear, N_materialtmp[i].poisson, N_materialtmp[i].cTE, N_materialtmp[i].scale)
+ end
+
+ #tendons
+ if !haskey(setup,"tendonIds")
+ setup["tendonIds"]=[]
+ end
+ if !haskey(setup,"mu")
+ setup["mu"]=0.5
+ end
+ tendonIds=setup["tendonIds"]
+ mu=setup["mu"]
+
+
+ end
+
+ function simulateParallel!(metavoxel,maxNumTimeSteps,dt,sys="GPU")
+ val=(maxNumTimeSteps+1)/100000
+ for i in 1:maxNumTimeSteps
+ if (mod(i,(maxNumTimeSteps+1)/val)==0)
+ if (logging)
+ display("$((i/val/100))%")
+ end
+ end
+ doTimeStep!(metavoxel,dt,i,sys)
+ if (mod(i,saveEvery)==0)
+ #append!(displacements,[Array(metavoxel["N_displacementGPU"])])
+ updateDataAndSave!(metavoxel,setup,"$(folderPath)$(numFile).json",sys)
+ numFile+=1
+ if numFile>maxNumFiles
+ numFile=0
+ end
+ end
+ end
+
+ end
+
+ ########
+ voxCount=0
+ linkCount=0
+ nodes = setup["nodes"]
+ edges = setup["edges"]
+ voxCount=size(nodes)[1]
+ linkCount=size(edges)[1]
+ strain =0 #todooo moveeee
+ maxNumEdges=24
+
+ ############# nodes
+ N_position=fill(Vector3(),voxCount)
+ N_restrained=fill(DOF(), voxCount)
+ N_displacement=fill(Vector3(),voxCount)
+ N_angle=fill(Vector3(),voxCount)
+ N_currPosition=fill(Vector3(),voxCount)
+ N_linMom=fill(Vector3(),voxCount)
+ N_angMom=fill(Vector3(),voxCount)
+ N_intForce=fill(Vector3(),voxCount)
+ N_intMoment=fill(Vector3(),voxCount)
+ N_moment=fill(Vector3(),voxCount)
+ N_force=fill(Vector3(),voxCount)
+ N_fixedDisplacement=fill(Vector3(),voxCount)
+ N_orient=fill(Quaternion(),voxCount)
+ N_edgeID=fill(-1,(voxCount,maxNumEdges))
+ N_edgeFirst=fill(true,(voxCount,maxNumEdges))
+ N_currEdge=fill(1,voxCount)
+ N_material=fill(voxelMaterial(),voxCount)
+ N_materialtmp=fill(voxelMaterial(),voxCount)
+ N_poissonStrain=fill(Vector3(),voxCount)
+ N_vel=fill(Vector3(),voxCount)
+ N_velAngl=fill(Vector3(),voxCount)
+
+ ############# edges
+ E_source=fill(0,linkCount)
+ E_target=fill(0,linkCount)
+ E_sourceNodalCoordinate=fill(0,linkCount)
+ E_targetNodalCoordinate=fill(0,linkCount)
+ E_stress=fill(0.0,linkCount)
+ E_axis=fill(Vector3(1.0,0.0,0.0),linkCount)
+ E_currentRestLength=fill(0.0,linkCount)
+ E_pos2=fill(Vector3(),linkCount)
+ E_angle1v=fill(Vector3(),linkCount)
+ E_angle2v=fill(Vector3(),linkCount)
+ E_angle1=fill(Quaternion(),linkCount)
+ E_angle2=fill(Quaternion(),linkCount)
+
+ E_intForce1=fill(Vector3(),linkCount)
+ E_intMoment1=fill(Vector3(),linkCount)
+
+ E_intForce2=fill(Vector3(),linkCount)
+ E_intMoment2=fill(Vector3(),linkCount)
+ E_damp=fill(false,linkCount)
+ E_smallAngle=fill(true,linkCount)
+ E_material=fill(edgeMaterial(),linkCount)
+
+ E_strain=fill(0.0,linkCount)
+ E_maxStrain=fill(0.0,linkCount)
+ E_strainOffset=fill(0.0,linkCount)
+ E_currentTransverseArea=fill(0.0,linkCount)
+ E_currentTransverseStrainSum=fill(0.0,linkCount)# TODO remove ot incorporate
+
+ tendonIds=[]
+ mu=0.6;
+
+ #################################################################
+ initialize!(setup)
+ #################################################################
+ if (sys=="GPU")
+ ########################## turn to cuda arrays
+ ############# nodes
+ N_positionGPU= CuArray(N_position)
+ N_restrainedGPU= CuArray(N_restrained)
+ N_displacementGPU= CuArray(N_displacement)
+ N_angleGPU= CuArray(N_angle)
+ N_currPositionGPU= CuArray(N_currPosition)
+ N_linMomGPU= CuArray(N_linMom)
+ N_angMomGPU= CuArray(N_angMom)
+ N_intForceGPU= CuArray(N_intForce)
+ N_intMomentGPU= CuArray(N_intMoment)
+ N_momentGPU= CuArray(N_moment)
+ N_forceGPU= CuArray(N_force)
+ N_fixedDisplacementGPU= CuArray(N_fixedDisplacement)
+ N_orientGPU= CuArray(N_orient)
+ N_edgeIDGPU= CuArray(N_edgeID)
+ N_edgeFirstGPU= CuArray(N_edgeFirst)
+ N_materialGPU= CuArray(N_material)
+ N_poissonStrainGPU= CuArray(N_poissonStrain)
+ N_velGPU= CuArray(N_vel)
+ N_velAnglGPU= CuArray(N_velAngl)
+
+
+ ############# edges
+ E_sourceGPU= CuArray(E_source)
+ E_targetGPU= CuArray(E_target)
+ E_sourceNodalCoordinateGPU= CuArray(E_sourceNodalCoordinate)
+ E_targetNodalCoordinateGPU= CuArray(E_targetNodalCoordinate)
+ E_stressGPU= CuArray(E_stress)
+ E_axisGPU= CuArray(E_axis)
+ E_currentRestLengthGPU= CuArray(E_currentRestLength)
+ E_pos2GPU= CuArray(E_pos2)
+ E_angle1vGPU= CuArray(E_angle1v)
+ E_angle2vGPU= CuArray(E_angle2v)
+ E_angle1GPU= CuArray(E_angle1)
+ E_angle2GPU= CuArray(E_angle2)
+
+ E_strainGPU= CuArray(E_strain)
+ E_maxStrainGPU= CuArray(E_maxStrain)
+ E_strainOffsetGPU= CuArray(E_strainOffset)
+ E_currentTransverseAreaGPU= CuArray(E_currentTransverseArea)
+ E_currentTransverseStrainSumGPU=CuArray(E_currentTransverseStrainSum)# TODO remove ot incorporate
+
+ E_intForce1GPU= CuArray(E_intForce1)
+ E_intMoment1GPU= CuArray(E_intMoment1)
+ E_intForce2GPU= CuArray(E_intForce2)
+ E_intMoment2GPU= CuArray(E_intMoment2)
+ E_dampGPU= CuArray(E_damp)
+ E_smallAngleGPU= CuArray(E_smallAngle)
+ E_materialGPU= CuArray(E_material)
+
+
+
+ #########################################
+ metavoxel = Dict(
+ "N_positionGPU" => N_positionGPU,
+ "N_restrainedGPU" => N_restrainedGPU,
+ "N_displacementGPU" => N_displacementGPU,
+ "N_angleGPU" => N_angleGPU,
+ "N_currPositionGPU" => N_currPositionGPU,
+ "N_linMomGPU" => N_linMomGPU,
+ "N_angMomGPU" => N_angMomGPU,
+ "N_intForceGPU" => N_intForceGPU,
+ "N_intMomentGPU" => N_intMomentGPU,
+ "N_momentGPU" => N_momentGPU,
+ "N_forceGPU" => N_forceGPU,
+ "N_fixedDisplacementGPU"=>N_fixedDisplacementGPU,
+ "N_orientGPU" => N_orientGPU,
+ "N_edgeIDGPU" => N_edgeIDGPU,
+ "N_edgeFirstGPU" => N_edgeFirstGPU,
+ "N_materialGPU"=> N_materialGPU,
+ "N_poissonStrainGPU"=> N_poissonStrainGPU,
+ "N_velGPU"=> N_velGPU,
+ "N_velAnglGPU"=> N_velAnglGPU,
+
+ "E_sourceGPU" =>E_sourceGPU,
+ "E_targetGPU" =>E_targetGPU,
+ "E_sourceNodalCoordinateGPU" =>E_sourceNodalCoordinateGPU,
+ "E_targetNodalCoordinateGPU" =>E_targetNodalCoordinateGPU,
+ "E_stressGPU" =>E_stressGPU,
+ "E_axisGPU" =>E_axisGPU,
+ "E_currentRestLengthGPU" =>E_currentRestLengthGPU,
+ "E_pos2GPU" =>E_pos2GPU,
+ "E_angle1vGPU" =>E_angle1vGPU,
+ "E_angle2vGPU" =>E_angle2vGPU,
+ "E_angle1GPU" =>E_angle1GPU,
+ "E_angle2GPU" =>E_angle2GPU,
+
+ "E_strainGPU" =>E_strainGPU,
+ "E_maxStrainGPU" =>E_maxStrainGPU,
+ "E_strainOffsetGPU"=>E_strainOffsetGPU,
+ "E_currentTransverseAreaGPU" =>E_currentTransverseAreaGPU,
+ "E_currentTransverseStrainSumGPU" =>E_currentTransverseStrainSumGPU,
+
+ "E_intForce1GPU" =>E_intForce1GPU,
+ "E_intMoment1GPU" =>E_intMoment1GPU,
+ "E_intForce2GPU" =>E_intForce2GPU,
+ "E_intMoment2GPU" =>E_intMoment2GPU,
+ "E_dampGPU" =>E_dampGPU,
+ "E_smallAngleGPU" =>E_smallAngleGPU,
+ "E_materialGPU" =>E_materialGPU,
+ "tendonIds" =>tendonIds,
+ "mu"=>mu
+ )
+ else
+ # CPU
+ metavoxel = Dict(
+ "N_position" => N_position,
+ "N_restrained" => N_restrained,
+ "N_displacement" => N_displacement,
+ "N_angle" => N_angle,
+ "N_currPosition" => N_currPosition,
+ "N_linMom" => N_linMom,
+ "N_angMom" => N_angMom,
+ "N_intForce" => N_intForce,
+ "N_intMoment" => N_intMoment,
+ "N_moment" => N_moment,
+ "N_force" => N_force,
+ "N_fixedDisplacement"=>N_fixedDisplacement,
+ "N_orient" => N_orient,
+ "N_edgeID" => N_edgeID,
+ "N_edgeFirst" => N_edgeFirst,
+ "N_material"=> N_material,
+ "N_poissonStrain"=> N_poissonStrain,
+ "N_vel"=> N_vel,
+ "N_velAngl"=> N_velAngl,
+
+ "E_source" =>E_source,
+ "E_target" =>E_target,
+ "E_sourceNodalCoordinate" =>E_sourceNodalCoordinate,
+ "E_targetNodalCoordinate" =>E_targetNodalCoordinate,
+ "E_stress" =>E_stress,
+ "E_axis" =>E_axis,
+ "E_currentRestLength" =>E_currentRestLength,
+ "E_pos2" =>E_pos2,
+ "E_angle1v" =>E_angle1v,
+ "E_angle2v" =>E_angle2v,
+ "E_angle1" =>E_angle1,
+ "E_angle2" =>E_angle2,
+
+ "E_strain" =>E_strain,
+ "E_maxStrain" =>E_maxStrain,
+ "E_strainOffset"=>E_strainOffset,
+ "E_currentTransverseArea" =>E_currentTransverseArea,
+ "E_currentTransverseStrainSum" =>E_currentTransverseStrainSum,
+
+ "E_intForce1" =>E_intForce1,
+ "E_intMoment1" =>E_intMoment1,
+ "E_intForce2" =>E_intForce2,
+ "E_intMoment2" =>E_intMoment2,
+ "E_damp" =>E_damp,
+ "E_smallAngle" =>E_smallAngle,
+ "E_material" =>E_material,
+
+ "tendonIds" =>tendonIds,
+ "mu"=>mu
+ )
+ end
+
+ #########################################
+
+ #todo make recommended timestep a function
+ dt=0.0251646
+ E = setup["edges"][1]["material"]["stiffness"] # MPa
+ s=round(sqrt(setup["edges"][1]["material"]["area"] );digits=10)
+ # s=E_material[1].L
+
+ # s=setup["voxelSize"]
+ mass=N_material[1].mass
+
+ if(!setup["hierarchical"])
+ s=E_material[1].L
+ mass=round(setup["edges"][1]["material"]["area"]*E_material[1].L *setup["edges"][1]["material"]["density"];digits=10)
+ end
+ MaxFreq2=E*s/mass
+ if(setup["poisson"])
+ # mat->_eHat*currentTransverseArea/((strain+1.0)*currentRestLength)
+ eHat=E_material[1].eHat
+ temp=eHat*E_material[1].b*E_material[1].h/((0.0+1.0)*E_material[1].L)
+ MaxFreq2=temp/mass
+ end
+
+ dt= 1.0/(6.283185*sqrt(MaxFreq2))
+ # dt=dt*4 #manual speedup
+ if (logging)
+ println("dt: $dt, s: $s, mass: $mass, momentInertiaInverse: $(N_material[1].momentInertiaInverse)")
+ end
+ setup["dt"]=dt
+
+ numFile=0
+ numSaves=0
+ t=@timed doTimeStep!(metavoxel,dt,0,sys)
+ time=t[2]
+
+ if (logging)
+ println("first timestep took $time seconds")
+ end
+ t=@timed simulateParallel!(metavoxel,maxNumTimeSteps-1,dt,sys)
+ time=t[2]
+
+ setup["maxNumFiles"]=numSaves
+ if (logging)
+ println("ran $voxCount nodes and $linkCount edges for $maxNumTimeSteps time steps took $time seconds")
+ end
+ return
+end
+
+########################################
+
+function doTimeStep!(metavoxel,dt,currentTimeStep,sys="GPU")
+ if (sys=="GPU")
+ # update forces: go through edges, get currentposition from nodes, calc pos2 and update stresses and interior forces of nodes
+ run_updateEdgesGPU!(dt,currentTimeStep,
+ metavoxel["E_sourceGPU"],
+ metavoxel["E_targetGPU"],
+ metavoxel["E_sourceNodalCoordinateGPU"],
+ metavoxel["E_targetNodalCoordinateGPU"],
+ metavoxel["E_stressGPU"],
+ metavoxel["E_axisGPU"],
+ metavoxel["E_currentRestLengthGPU"],
+ metavoxel["E_pos2GPU"],
+ metavoxel["E_angle1vGPU"],
+ metavoxel["E_angle2vGPU"],
+ metavoxel["E_angle1GPU"],
+ metavoxel["E_angle2GPU"],
+ metavoxel["E_intForce1GPU"],
+ metavoxel["E_intMoment1GPU"],
+ metavoxel["E_intForce2GPU"],
+ metavoxel["E_intMoment2GPU"],
+ metavoxel["E_dampGPU"],
+ metavoxel["E_smallAngleGPU"],
+ metavoxel["E_materialGPU"],
+ metavoxel["E_strainGPU"],
+ metavoxel["E_maxStrainGPU"],
+ metavoxel["E_strainOffsetGPU"],
+ metavoxel["E_currentTransverseAreaGPU"],
+ metavoxel["E_currentTransverseStrainSumGPU"],
+ metavoxel["N_currPositionGPU"],
+ metavoxel["N_orientGPU"]
+ )
+
+ # update forces on tendons
+ run_updateTendonsGPU!(dt,currentTimeStep,
+ metavoxel["N_positionGPU"],
+ metavoxel["N_forceGPU"],
+ metavoxel["N_currPositionGPU"],
+ metavoxel["tendonIds"],
+ metavoxel["mu"]
+ )
+
+ # update forces: go through nodes and update interior force (according to int forces from edges), integrate and update currpos
+ run_updateNodesGPU!(dt,currentTimeStep,
+ metavoxel["N_positionGPU"],
+ metavoxel["N_restrainedGPU"],
+ metavoxel["N_displacementGPU"],
+ metavoxel["N_angleGPU"],
+ metavoxel["N_currPositionGPU"],
+ metavoxel["N_linMomGPU"],
+ metavoxel["N_angMomGPU"],
+ metavoxel["N_intForceGPU"],
+ metavoxel["N_intMomentGPU"],
+ metavoxel["N_forceGPU"],
+ metavoxel["N_fixedDisplacementGPU"],
+ metavoxel["N_momentGPU"],
+ metavoxel["N_orientGPU"],
+ metavoxel["N_edgeIDGPU"],
+ metavoxel["N_edgeFirstGPU"],
+ metavoxel["N_materialGPU"],
+ metavoxel["N_poissonStrainGPU"],
+ metavoxel["N_velGPU"],
+ metavoxel["N_velAnglGPU"],
+ metavoxel["E_intForce1GPU"],
+ metavoxel["E_intMoment1GPU"],
+ metavoxel["E_intForce2GPU"],
+ metavoxel["E_intMoment2GPU"],
+ metavoxel["E_axisGPU"],
+ metavoxel["E_strainGPU"],
+ metavoxel["E_materialGPU"],
+ metavoxel["E_maxStrainGPU"]
+ )
+
+ else
+ # CPU
+ # update forces: go through edges, get currentposition from nodes, calc pos2 and update stresses and interior forces of nodes
+ updateEdgesCPU!(dt,currentTimeStep,
+ metavoxel["E_source"],
+ metavoxel["E_target"],
+ metavoxel["E_sourceNodalCoordinate"],
+ metavoxel["E_targetNodalCoordinate"],
+ metavoxel["E_stress"],
+ metavoxel["E_axis"],
+ metavoxel["E_currentRestLength"],
+ metavoxel["E_pos2"],
+ metavoxel["E_angle1v"],
+ metavoxel["E_angle2v"],
+ metavoxel["E_angle1"],
+ metavoxel["E_angle2"],
+ metavoxel["E_intForce1"],
+ metavoxel["E_intMoment1"],
+ metavoxel["E_intForce2"],
+ metavoxel["E_intMoment2"],
+ metavoxel["E_damp"],
+ metavoxel["E_smallAngle"],
+ metavoxel["E_material"],
+ metavoxel["E_strain"],
+ metavoxel["E_maxStrain"],
+ metavoxel["E_strainOffset"],
+ metavoxel["E_currentTransverseArea"],
+ metavoxel["E_currentTransverseStrainSum"],
+ metavoxel["N_currPosition"],
+ metavoxel["N_orient"],
+ metavoxel["N_poissonStrain"]
+ )
+
+ # update forces on tendons
+ updateTendonsCPU!(dt,currentTimeStep,
+ metavoxel["N_position"],
+ metavoxel["N_force"],
+ metavoxel["N_currPosition"],
+ metavoxel["tendonIds"],
+ metavoxel["mu"]
+ )
+
+ # update forces: go through nodes and update interior force (according to int forces from edges), integrate and update currpos
+ updateNodesCPU!(dt,currentTimeStep,
+ metavoxel["N_position"],
+ metavoxel["N_restrained"],
+ metavoxel["N_displacement"],
+ metavoxel["N_angle"],
+ metavoxel["N_currPosition"],
+ metavoxel["N_linMom"],
+ metavoxel["N_angMom"],
+ metavoxel["N_intForce"],
+ metavoxel["N_intMoment"],
+ metavoxel["N_force"],
+ metavoxel["N_fixedDisplacement"],
+ metavoxel["N_moment"],
+ metavoxel["N_orient"],
+ metavoxel["N_edgeID"],
+ metavoxel["N_edgeFirst"],
+ metavoxel["N_material"],
+ metavoxel["N_poissonStrain"],
+ metavoxel["N_vel"],
+ metavoxel["N_velAngl"],
+ metavoxel["E_intForce1"],
+ metavoxel["E_intMoment1"],
+ metavoxel["E_intForce2"],
+ metavoxel["E_intMoment2"],
+ metavoxel["E_axis"],
+ metavoxel["E_strain"],
+ metavoxel["E_material"],
+ metavoxel["E_maxStrain"]
+ )
+
+
+ end
+
+end
diff --git a/julia/include/updateNodes.jl b/julia/include/updateNodes.jl
index 5f01009..ea090dd 100644
--- a/julia/include/updateNodes.jl
+++ b/julia/include/updateNodes.jl
@@ -5,7 +5,7 @@
function updateNodes!(sys,i,dt,currentTimeStep,N_position, N_restrained,N_displacement,N_angle,N_currPosition,N_linMom,N_angMom,
- N_intForce,N_intMoment,N_force,N_fixedDisplacement,N_moment,N_orient,N_edgeID,N_edgeFirst,N_material,N_poissonStrain,
+ N_intForce,N_intMoment,N_force,N_fixedDisplacement,N_moment,N_orient,N_edgeID,N_edgeFirst,N_material,N_poissonStrain, N_vel, N_velAngl,
E_intForce1,E_intMoment1,E_intForce2,E_intMoment2,E_axis, E_strain,E_material,E_maxStrain)
############################################################
@@ -57,7 +57,7 @@ function updateNodes!(sys,i,dt,currentTimeStep,N_position, N_restrained,N_displa
@inbounds mass=roundd(N_material[i].mass,prec)
@inbounds massInverse=roundd(N_material[i].massInverse,prec)
- @inbounds curForce = force(i,N_intForce[i],N_orient[i],N_force[i],N_position[i],N_currPosition[i],currentTimeStep,N_material[i],N_linMom[i])
+ @inbounds curForce = force(i,N_intForce[i],N_orient[i],N_force[i],N_position[i],N_currPosition[i],currentTimeStep,N_material[i],N_linMom[i],N_vel)
fricForce = Vector3(curForce.x,curForce.y,curForce.z);
if (isFloorEnabled)
@@ -120,7 +120,7 @@ function updateNodes!(sys,i,dt,currentTimeStep,N_position, N_restrained,N_displa
# Rotation
- @inbounds curMoment = moment(N_intMoment[i],N_orient[i],N_moment[i],N_material[i],N_angMom[i])
+ @inbounds curMoment = moment(i,N_intMoment[i],N_orient[i],N_moment[i],N_material[i],N_angMom[i],N_velAngl)
@inbounds N_intMoment[i]=Vector3(0,0,0) # do i really need it?
@inbounds N_intForce[i]=Vector3(0,0,0) # do i really need it?
@@ -151,7 +151,7 @@ end
############################
function updateNodesGPU!(dt,currentTimeStep,N_position, N_restrained,N_displacement,N_angle,N_currPosition,N_linMom,N_angMom,
- N_intForce,N_intMoment,N_force,N_fixedDisplacement,N_moment,N_orient,N_edgeID,N_edgeFirst,N_material,N_poissonStrain,
+ N_intForce,N_intMoment,N_force,N_fixedDisplacement,N_moment,N_orient,N_edgeID,N_edgeFirst,N_material,N_poissonStrain, N_vel, N_velAngl,
E_intForce1,E_intMoment1,E_intForce2,E_intMoment2,E_axis, E_strain,E_material,E_maxStrain)
index = (blockIdx().x - 1) * blockDim().x + threadIdx().x
@@ -160,20 +160,20 @@ function updateNodesGPU!(dt,currentTimeStep,N_position, N_restrained,N_displacem
N,M=size(N_edgeID)
for i = index:stride:N
updateNodes!(1,i,dt,currentTimeStep,N_position, N_restrained,N_displacement,N_angle,N_currPosition,N_linMom,N_angMom,
- N_intForce,N_intMoment,N_force,N_fixedDisplacement,N_moment,N_orient,N_edgeID,N_edgeFirst,N_material,N_poissonStrain,
+ N_intForce,N_intMoment,N_force,N_fixedDisplacement,N_moment,N_orient,N_edgeID,N_edgeFirst,N_material,N_poissonStrain, N_vel, N_velAngl,
E_intForce1,E_intMoment1,E_intForce2,E_intMoment2,E_axis, E_strain,E_material,E_maxStrain)
end
return
end
function updateNodesCPU!(dt,currentTimeStep,N_position, N_restrained,N_displacement,N_angle,N_currPosition,N_linMom,N_angMom,
- N_intForce,N_intMoment,N_force,N_fixedDisplacement,N_moment,N_orient,N_edgeID,N_edgeFirst,N_material,N_poissonStrain,
+ N_intForce,N_intMoment,N_force,N_fixedDisplacement,N_moment,N_orient,N_edgeID,N_edgeFirst,N_material,N_poissonStrain, N_vel, N_velAngl,
E_intForce1,E_intMoment1,E_intForce2,E_intMoment2,E_axis, E_strain,E_material,E_maxStrain)
N,M=size(N_edgeID)
Threads.@threads for i = 1:N
updateNodes!(0,i,dt,currentTimeStep,N_position, N_restrained,N_displacement,N_angle,N_currPosition,N_linMom,N_angMom,
- N_intForce,N_intMoment,N_force,N_fixedDisplacement,N_moment,N_orient,N_edgeID,N_edgeFirst,N_material,N_poissonStrain,
+ N_intForce,N_intMoment,N_force,N_fixedDisplacement,N_moment,N_orient,N_edgeID,N_edgeFirst,N_material,N_poissonStrain, N_vel, N_velAngl,
E_intForce1,E_intMoment1,E_intForce2,E_intMoment2,E_axis, E_strain,E_material,E_maxStrain)
end
return
diff --git a/jupyter/AM216_Final_Project.ipynb b/jupyter/AM216_Final_Project.ipynb
new file mode 100644
index 0000000..aad67c5
--- /dev/null
+++ b/jupyter/AM216_Final_Project.ipynb
@@ -0,0 +1,1348 @@
+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "# AM216 Final Project"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## 1. Import Libraries"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 18,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "GPU=false # if you want to use the gpu or not\n",
+ "plotting=false # if going to plot graphs\n",
+ "logging=false # if you want the simulation to be verbose\n",
+ "include(\"../julia/MetaVoxels.jl\") #load MetaVoxels!"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## 2. Create Training and Generalization Data"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Generate random values for coefficient of thermal expansion "
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "using Distributions\n",
+ "# Generate random values for coefficient of thermal expansion\n",
+ "n_train=256\n",
+ "n_gen=100\n",
+ "#training \n",
+ "r_train_1=rand(Uniform(0.0,0.2), n_train) #upper material\n",
+ "r_train_2=rand(Uniform(0.0,0.2), n_train) #lower material\n",
+ "\n",
+ "r_1_gen_1=rand(Uniform(0.0,0.2), n_gen) #upper material\n",
+ "r_1_gen_2=rand(Uniform(0.0,0.2), n_gen) #lower material\n",
+ "\n",
+ "r_2_gen_1=rand(Uniform(0.0,0.2), n_gen) #upper material\n",
+ "r_2_gen_2=rand(Uniform(0.0,0.2), n_gen); #lower material"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Generate names for simulations"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "simNameTrainName= \"AM216_Final_Project/train\" \n",
+ "simNameTrain=[]\n",
+ "for i in 1:n_train\n",
+ " append!(simNameTrain,[\"$(simNameTrainName)/$(i)\"])\n",
+ "end\n",
+ "\n",
+ "simNameGen1Name= \"AM216_Final_Project/gen1\" \n",
+ "simNameGen1=[]\n",
+ "for i in 1:n_gen\n",
+ " append!(simNameGen1,[\"$(simNameGen1Name)/$(i)\"])\n",
+ "end\n",
+ "\n",
+ "simNameGen2Name= \"AM216_Final_Project/gen2\" \n",
+ "simNameGen2=[]\n",
+ "for i in 1:n_gen\n",
+ " append!(simNameGen2,[\"$(simNameGen2Name)/$(i)\"])\n",
+ "end\n",
+ "\n"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Generate folders for simulations"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 13,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "\"../json/AM216_Final_Project/gen2\""
+ ]
+ },
+ "execution_count": 13,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "if !isdir(\"../json/AM216_Final_Project\")\n",
+ " mkdir(\"../json/AM216_Final_Project\")\n",
+ "end\n",
+ "if !isdir(\"../json/$(simNameTrainName)/\")\n",
+ " mkdir(\"../json/$(simNameTrainName)\")\n",
+ "end\n",
+ "if !isdir(\"../json/$(simNameGen1Name)/\")\n",
+ " mkdir(\"../json/$(simNameGen1Name)\")\n",
+ "end\n",
+ "if !isdir(\"../json/$(simNameGen2Name)/\")\n",
+ " mkdir(\"../json/$(simNameGen2Name)\")\n",
+ "end"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 16,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "for d in simNameTrain\n",
+ " if !isdir(\"../json/$(d)/\")\n",
+ " mkdir(\"../json/$(d)\")\n",
+ " end\n",
+ "end\n",
+ "for d in simNameGen1\n",
+ " if !isdir(\"../json/$(d)/\")\n",
+ " mkdir(\"../json/$(d)\")\n",
+ " end\n",
+ "end\n",
+ "for d in simNameGen2\n",
+ " if !isdir(\"../json/$(d)/\")\n",
+ " mkdir(\"../json/$(d)\")\n",
+ " end\n",
+ "end"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Create Simulation Starting Conditions"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 19,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Training Simulation 1\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 2\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 3\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 4\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 5\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 6\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 7\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 8\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 9\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 10\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 11\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 12\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 13\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 14\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 15\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 16\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 17\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 18\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 19\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 20\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 21\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 22\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 23\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 24\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 25\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 26\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 27\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 28\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 29\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 30\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 31\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 32\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 33\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 34\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 35\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 36\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 37\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 38\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 39\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 40\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 41\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 42\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 43\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 44\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 45\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 46\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 47\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 48\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 49\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 50\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 51\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 52\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 53\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 54\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 55\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 56\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 57\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 58\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 59\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 60\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 61\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 62\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 63\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 64\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 65\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 66\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 67\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 68\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 69\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 70\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 71\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 72\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 73\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 74\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 75\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 76\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 77\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 78\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 79\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 80\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 81\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 82\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 83\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 84\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 85\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 86\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 87\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 88\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 89\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 90\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 91\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 92\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 93\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 94\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 95\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 96\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 97\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 98\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 99\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 100\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 101\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 102\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 103\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 104\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 105\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Training Simulation 106\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 107\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 108\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 109\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 110\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 111\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 112\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 113\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 114\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 115\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 116\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 117\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 118\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 119\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 120\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 121\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 122\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 123\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 124\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 125\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 126\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 127\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 128\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 129\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 130\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 131\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 132\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 133\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 134\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 135\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 136\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 137\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 138\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 139\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 140\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 141\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 142\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 143\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 144\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 145\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 146\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 147\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 148\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 149\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 150\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 151\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 152\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 153\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 154\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 155\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 156\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 157\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 158\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 159\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 160\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 161\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 162\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 163\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 164\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 165\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 166\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 167\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 168\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 169\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 170\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 171\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 172\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 173\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 174\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 175\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 176\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 177\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 178\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 179\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 180\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 181\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 182\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 183\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 184\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 185\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 186\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 187\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 188\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 189\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 190\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 191\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 192\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 193\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 194\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 195\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 196\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 197\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 198\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 199\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 200\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 201\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 202\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 203\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 204\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 205\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 206\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 207\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 208\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 209\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Training Simulation 210\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 211\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 212\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 213\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 214\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 215\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 216\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 217\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 218\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 219\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 220\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 221\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 222\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 223\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 224\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 225\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 226\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 227\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 228\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 229\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 230\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 231\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 232\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 233\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 234\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 235\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 236\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 237\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 238\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 239\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 240\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 241\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 242\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 243\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 244\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 245\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 246\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 247\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 248\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 249\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 250\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 251\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 252\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 253\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 254\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 255\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n",
+ "Training Simulation 256\n",
+ "Success! Created structure with 28 nodes and 52 edges.\n"
+ ]
+ }
+ ],
+ "source": [
+ "# training\n",
+ "for i in 1:n_train\n",
+ " println(\"Training Simulation $i\")\n",
+ " # get a saved setup from an external julia file\n",
+ " include(\"../julia/examples/AM216_Final_Project/thermalTest_train.jl\") #template for multimaterial hierarchical voxels with different thermal coefficient of thermal expansion \n",
+ " material1[\"cTE\"]=r_train_1[i] #coefficient of thermal expansion for material 1\n",
+ " material2[\"cTE\"]=r_train_2[i] #coefficient of thermal expansion for material 2\n",
+ "\n",
+ "\n",
+ " ## recompile these just for sanity check for dynamic loads\n",
+ " include(\"../julia/MetaVoxels.jl\") \n",
+ "\n",
+ " #export setup using nodejs and javascript from \"./json/$(simName)Init.json\" and save to \"./json/$(simName).json\"\n",
+ " exportJuliaSettingsUsingNode(setup,simNameTrain[i])\n",
+ "end"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 34,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Gen 1 Simulation 1\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 2\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 3\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 4\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 5\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 6\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 7\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 8\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 9\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 10\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 11\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 12\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 13\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 14\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 15\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 16\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 17\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 18\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 19\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 20\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 21\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 22\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 23\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 24\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 25\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 26\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 27\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 28\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 29\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 30\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 31\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 32\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 33\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 34\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 35\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 36\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 37\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 38\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 39\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 40\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 41\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 42\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 43\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 44\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 45\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 46\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 47\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 48\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 49\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 50\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 51\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 52\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 53\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 54\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 55\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 56\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 57\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 58\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 59\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 60\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 61\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 62\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 63\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 64\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 65\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 66\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 67\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 68\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 69\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 70\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 71\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 72\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 73\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 74\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 75\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 76\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 77\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 78\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 79\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 80\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 81\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 82\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 83\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 84\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 85\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 86\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 87\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 88\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 89\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 90\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 91\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 92\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 93\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 94\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 95\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 96\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 97\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 98\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 99\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n",
+ "Gen 1 Simulation 100\n",
+ "Success! Created structure with 20 nodes and 36 edges.\n"
+ ]
+ }
+ ],
+ "source": [
+ "# gen 1\n",
+ "for i in 1:n_gen\n",
+ " println(\"Gen 1 Simulation $i\")\n",
+ " # get a saved setup from an external julia file\n",
+ " include(\"../julia/examples/AM216_Final_Project/thermalTest_gen_1.jl\") #template for multimaterial hierarchical voxels with different thermal coefficient of thermal expansion \n",
+ " material1[\"cTE\"]=r_1_gen_1[i] #coefficient of thermal expansion for material 1\n",
+ " material2[\"cTE\"]=r_1_gen_2[i] #coefficient of thermal expansion for material 2\n",
+ "\n",
+ "\n",
+ " ## recompile these just for sanity check for dynamic loads\n",
+ " include(\"../julia/MetaVoxels.jl\") \n",
+ "\n",
+ " #export setup using nodejs and javascript from \"./json/$(simName)Init.json\" and save to \"./json/$(simName).json\"\n",
+ " exportJuliaSettingsUsingNode(setup,simNameGen1[i])\n",
+ "end"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 35,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Gen 2 Simulation 1\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 2\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 3\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 4\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 5\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 6\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 7\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 8\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 9\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 10\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 11\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 12\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 13\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 14\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 15\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 16\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 17\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 18\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 19\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 20\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 21\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 22\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 23\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 24\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 25\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 26\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 27\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 28\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 29\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 30\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 31\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 32\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 33\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 34\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 35\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 36\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 37\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 38\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 39\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 40\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 41\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 42\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 43\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 44\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 45\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 46\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 47\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 48\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 49\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 50\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 51\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 52\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 53\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 54\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 55\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 56\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 57\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 58\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 59\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 60\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 61\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 62\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 63\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 64\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 65\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 66\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 67\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 68\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 69\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 70\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 71\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 72\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 73\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 74\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 75\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 76\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 77\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 78\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 79\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 80\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 81\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 82\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 83\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 84\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 85\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 86\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 87\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 88\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 89\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 90\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 91\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 92\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 93\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 94\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 95\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 96\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 97\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 98\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 99\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n",
+ "Gen 2 Simulation 100\n",
+ "Success! Created structure with 36 nodes and 68 edges.\n"
+ ]
+ }
+ ],
+ "source": [
+ "# gen 2\n",
+ "for i in 1:n_gen\n",
+ " println(\"Gen 2 Simulation $i\")\n",
+ " # get a saved setup from an external julia file\n",
+ " include(\"../julia/examples/AM216_Final_Project/thermalTest_gen_2.jl\") #template for multimaterial hierarchical voxels with different thermal coefficient of thermal expansion \n",
+ " material1[\"cTE\"]=r_2_gen_1[i] #coefficient of thermal expansion for material 1\n",
+ " material2[\"cTE\"]=r_2_gen_2[i] #coefficient of thermal expansion for material 2\n",
+ "\n",
+ "\n",
+ " ## recompile these just for sanity check for dynamic loads\n",
+ " include(\"../julia/MetaVoxels.jl\") \n",
+ "\n",
+ " #export setup using nodejs and javascript from \"./json/$(simName)Init.json\" and save to \"./json/$(simName).json\"\n",
+ " exportJuliaSettingsUsingNode(setup,simNameGen2[i])\n",
+ "end"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## 3. Run Simulations"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 30,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "using ProgressMeter"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 29,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "\u001b[32mTraining Simulation... 100%|█████████████████████████████| Time: 0:02:15\u001b[39m\n"
+ ]
+ }
+ ],
+ "source": [
+ "# training\n",
+ "@showprogress 1 \"Training Simulation...\" for i in 1:n_train\n",
+ " # println(\"Training Simulation $i\")\n",
+ " setupSim=getSetup(simNameTrain[i]); #get simulation from\"./json/$(simName).json\"\n",
+ " savedDataFolderPath=\"../json/$(simNameTrain[i])/\" # make sure this folder exists, this is where the simulation result will be saved\n",
+ " runMetaVoxels!(setupSim,savedDataFolderPath,\"CPU\");\n",
+ "end"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 36,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "\u001b[32mGen 1 Simulation... 100%|████████████████████████████████| Time: 0:00:49\u001b[39m\n"
+ ]
+ }
+ ],
+ "source": [
+ "# gen 1\n",
+ "@showprogress 1 \"Gen 1 Simulation...\" for i in 1:n_gen\n",
+ " setupSim=getSetup(simNameGen1[i]); #get simulation from\"./json/$(simName).json\"\n",
+ " savedDataFolderPath=\"../json/$(simNameGen1[i])/\" # make sure this folder exists, this is where the simulation result will be saved\n",
+ " runMetaVoxels!(setupSim,savedDataFolderPath,\"CPU\");\n",
+ "end"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 37,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "\u001b[32mGen 2 Simulation... 100%|████████████████████████████████| Time: 0:01:06\u001b[39m\n"
+ ]
+ }
+ ],
+ "source": [
+ "# gen 2\n",
+ "@showprogress 1 \"Gen 2 Simulation...\" for i in 1:n_gen\n",
+ " setupSim=getSetup(simNameGen2[i]); #get simulation from\"./json/$(simName).json\"\n",
+ " savedDataFolderPath=\"../json/$(simNameGen2[i])/\" # make sure this folder exists, this is where the simulation result will be saved\n",
+ " runMetaVoxels!(setupSim,savedDataFolderPath,\"CPU\");\n",
+ "end"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## 4. Visualize \n",
+ "(only need to run it once to open the server then press stop, the server will keep running and other changes will update automatically.. will change later)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 33,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Server listening on port 8000\n",
+ "Open http://localhost:8000/demos/indexTutorialGraph.html in your browser\n"
+ ]
+ },
+ {
+ "ename": "LoadError",
+ "evalue": "InterruptException:",
+ "output_type": "error",
+ "traceback": [
+ "InterruptException:",
+ "",
+ "Stacktrace:",
+ " [1] try_yieldto(undo::typeof(Base.ensure_rescheduled))",
+ " @ Base .\\task.jl:710",
+ " [2] wait()",
+ " @ Base .\\task.jl:770",
+ " [3] wait(c::Base.GenericCondition{SpinLock})",
+ " @ Base .\\condition.jl:106",
+ " [4] wait(x::Base.Process)",
+ " @ Base .\\process.jl:621",
+ " [5] success",
+ " @ .\\process.jl:483 [inlined]",
+ " [6] run(::Cmd; wait::Bool)",
+ " @ Base .\\process.jl:440",
+ " [7] run(::Cmd)",
+ " @ Base .\\process.jl:438",
+ " [8] top-level scope",
+ " @ In[33]:3",
+ " [9] eval",
+ " @ .\\boot.jl:360 [inlined]",
+ " [10] include_string(mapexpr::typeof(REPL.softscope), mod::Module, code::String, filename::String)",
+ " @ Base .\\loading.jl:1116"
+ ]
+ }
+ ],
+ "source": [
+ "#run node.js to serve the indexTutorial.html for visualizarion\n",
+ "mycommand = `node ../node/serve.js Example`\n",
+ "run(mycommand)\n",
+ "\n",
+ "# vis 1 stable\n",
+ "# http://localhost:8080/demos/indexExampleGraph.html\n",
+ "\n",
+ "# vis 2 faster for larger simulations\n",
+ "# http://localhost:8080/demos/indexExampleGraph.html\n",
+ "\n",
+ "# vis 3 (GPU Shaders) even faster (max 40 timesteps)"
+ ]
+ }
+ ],
+ "metadata": {
+ "@webio": {
+ "lastCommId": null,
+ "lastKernelId": null
+ },
+ "kernelspec": {
+ "display_name": "Julia 1.6.3",
+ "language": "julia",
+ "name": "julia-1.6"
+ },
+ "language_info": {
+ "file_extension": ".jl",
+ "mimetype": "application/julia",
+ "name": "julia",
+ "version": "1.6.3"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}
--
GitLab